Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC027688.2-201ENST00000569009 511 ntTSL 3 BASIC8.5□□□□□ -1.05
LIG1P18858 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC8.5□□□□□ -1.05
LIG1P18858 AC009716.1-201ENST00000583287 398 ntTSL 3 BASIC8.5□□□□□ -1.05
LIG1P18858 MTCO2P2-201ENST00000591258 225 ntBASIC8.5□□□□□ -1.05
LIG1P18858 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC8.5□□□□□ -1.05
LIG1P18858 SLFN5-203ENST00000592325 1225 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC8.5□□□□□ -1.05
LIG1P18858 U47924.1-201ENST00000606539 434 ntBASIC8.5□□□□□ -1.05
LIG1P18858 AC096586.1-201ENST00000610267 561 ntBASIC8.5□□□□□ -1.05
LIG1P18858 AC108861.1-201ENST00000611634 585 ntTSL 4 BASIC8.5□□□□□ -1.05
LIG1P18858 CT45A8-202ENST00000611660 1008 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 CT45A10-201ENST00000611668 1010 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 CT45A2-202ENST00000612907 1008 ntAPPRIS P1 TSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 AL512506.2-201ENST00000624472 458 ntBASIC8.5□□□□□ -1.05
LIG1P18858 AC079416.3-201ENST00000624479 549 ntBASIC8.5□□□□□ -1.05
LIG1P18858 AC110769.3-201ENST00000624567 1173 ntBASIC8.5□□□□□ -1.05
LIG1P18858 LINC01709-202ENST00000635702 1204 ntTSL 5 BASIC8.5□□□□□ -1.05
LIG1P18858 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
LIG1P18858 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
LIG1P18858 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC8.5□□□□□ -1.05
LIG1P18858 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC8.5□□□□□ -1.05
LIG1P18858 MAP3K19-206ENST00000392918 1460 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC8.5□□□□□ -1.05
LIG1P18858 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC8.5□□□□□ -1.05
LIG1P18858 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC8.5□□□□□ -1.05
LIG1P18858 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AC099654.3-201ENST00000447087 1546 ntBASIC8.49□□□□□ -1.05
LIG1P18858 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 SMG1P4-203ENST00000517529 1589 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 TMC5-208ENST00000564959 2434 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 RPL24P7-201ENST00000399435 453 ntBASIC8.49□□□□□ -1.05
LIG1P18858 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 Z97206.2-201ENST00000423489 589 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AL512637.2-201ENST00000431287 1256 ntBASIC8.49□□□□□ -1.05
LIG1P18858 VN1R108P-201ENST00000431580 830 ntBASIC8.49□□□□□ -1.05
LIG1P18858 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 AL136460.1-201ENST00000442389 473 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 KATNBL1P3-201ENST00000443475 909 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC114488.2-222ENST00000445166 362 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 LINC01961-201ENST00000449954 745 ntTSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 AC106774.2-201ENST00000510266 406 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC109464.1-201ENST00000511091 819 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC026700.1-201ENST00000512074 544 ntBASIC8.49□□□□□ -1.05
LIG1P18858 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 AC118465.1-201ENST00000513820 1271 ntBASIC8.49□□□□□ -1.05
LIG1P18858 RPL27A-210ENST00000531978 867 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC8.49□□□□□ -1.05
LIG1P18858 HNRNPC-226ENST00000556628 1156 ntTSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC8.49□□□□□ -1.05
LIG1P18858 ZNF971P-201ENST00000562068 1249 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC009119.1-202ENST00000567342 543 ntTSL 4 BASIC8.49□□□□□ -1.05
LIG1P18858 RPS11-203ENST00000596873 583 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 AP001160.4-201ENST00000596971 382 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC027334.1-201ENST00000603257 310 ntBASIC8.49□□□□□ -1.05
LIG1P18858 CT45A7-201ENST00000610598 996 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 AL390036.1-203ENST00000635340 894 ntTSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AC016582.3-206ENST00000636547 207 ntBASIC8.49□□□□□ -1.05
LIG1P18858 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC8.49□□□□□ -1.05
LIG1P18858 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AP003175.1-201ENST00000641383 6658 ntBASIC8.49□□□□□ -1.05
LIG1P18858 AC133552.3-201ENST00000572236 1869 ntBASIC8.49□□□□□ -1.05
LIG1P18858 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC8.49□□□□□ -1.05
LIG1P18858 IFNA13-202ENST00000610660 1539 ntAPPRIS P2 BASIC8.49□□□□□ -1.05
LIG1P18858 Z96074.1-203ENST00000637685 1746 ntTSL 5 BASIC8.49□□□□□ -1.05
LIG1P18858 AC074198.1-201ENST00000506546 1397 ntBASIC8.48□□□□□ -1.05
LIG1P18858 SLC9A9-201ENST00000316549 3627 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 MTA3-201ENST00000405094 1785 ntTSL 5 BASIC8.48□□□□□ -1.05
LIG1P18858 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 RACGAP1-221ENST00000551016 2193 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 AC123769.2-201ENST00000624332 5984 ntBASIC8.48□□□□□ -1.05
LIG1P18858 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
LIG1P18858 GSTM2-207ENST00000460717 1449 ntTSL 2 BASIC8.48□□□□□ -1.05
LIG1P18858 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC8.48□□□□□ -1.05
LIG1P18858 WFDC8-201ENST00000289953 1069 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 KRTAP19-6-201ENST00000334046 330 ntAPPRIS P1 BASIC8.48□□□□□ -1.05
LIG1P18858 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 C1orf54-203ENST00000369102 1251 ntAPPRIS P1 TSL 5 BASIC8.48□□□□□ -1.05
LIG1P18858 NXT2-204ENST00000372107 937 ntTSL 3 BASIC8.48□□□□□ -1.05
LIG1P18858 MIR106B-201ENST00000385301 82 ntBASIC8.48□□□□□ -1.05
LIG1P18858 GLS-203ENST00000409215 632 ntTSL 4 BASIC8.48□□□□□ -1.05
LIG1P18858 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 IFNA12P-201ENST00000413147 571 ntBASIC8.48□□□□□ -1.05
LIG1P18858 AL359885.1-201ENST00000415786 903 ntBASIC8.48□□□□□ -1.05
LIG1P18858 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC8.48□□□□□ -1.05
LIG1P18858 GAPDHP46-201ENST00000424043 994 ntBASIC8.48□□□□□ -1.05
LIG1P18858 MED15P9-201ENST00000424716 533 ntBASIC8.48□□□□□ -1.05
LIG1P18858 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC8.48□□□□□ -1.05
LIG1P18858 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
LIG1P18858 Z83313.1-201ENST00000433780 718 ntBASIC8.48□□□□□ -1.05
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms