Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 RPL17-C18orf32-203ENST00000584895 1440 ntAPPRIS P1 TSL 3 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 MITF-201ENST00000314557 1798 ntAPPRIS ALT1 TSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 CCDC129-205ENST00000451887 3611 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 TMEM132B-201ENST00000299308 10906 ntAPPRIS P3 TSL 5 BASIC7.07□□□□□ -1.28
HDDC3Q8N4P3 MPP7-201ENST00000337532 5080 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ZFP90-201ENST00000398253 4384 ntAPPRIS P1 TSL 4 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AL359715.1-201ENST00000404330 555 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 VN1R66P-201ENST00000412929 916 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC018804.1-201ENST00000430381 618 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 NPM1P23-201ENST00000440193 849 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AP000805.1-201ENST00000471604 784 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 RN7SL569P-201ENST00000494652 288 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC138035.1-201ENST00000499986 992 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC010834.1-201ENST00000517998 696 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AP005902.2-201ENST00000518393 307 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AZIN1-AS1-211ENST00000520455 480 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 IGKV2-4-201ENST00000523070 340 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 SAA3P-201ENST00000533267 365 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MIR378C-201ENST00000578683 81 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MIR212-201ENST00000586026 110 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC011498.1-203ENST00000589066 359 ntTSL 3 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AL365259.1-201ENST00000606334 509 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MIR6778-201ENST00000617912 73 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 AC130456.6-201ENST00000623745 765 ntBASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 BMX-201ENST00000342014 2499 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 OR8H1-203ENST00000641600 2927 ntAPPRIS P2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 TCL6-206ENST00000467865 3663 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 MKKS-201ENST00000347364 6714 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 LINC01013-201ENST00000422700 1831 ntTSL 5 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.06□□□□□ -1.28
HDDC3Q8N4P3 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC093752.1-213ENST00000503038 2376 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 PPFIBP1-202ENST00000318304 6001 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 BTN3A2-205ENST00000508906 3733 ntAPPRIS ALT2 TSL 2 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 RNA5SP152-201ENST00000365184 110 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL353133.1-201ENST00000407695 401 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 RNA5SP155-201ENST00000411154 129 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AF274855.1-201ENST00000411474 850 ntTSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 RPSAP60-201ENST00000415403 880 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL359885.1-201ENST00000415786 903 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 RPL7AP51-201ENST00000422016 760 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL121916.1-201ENST00000429405 308 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 MYL6P3-201ENST00000436904 432 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 LINC01771-201ENST00000445039 567 ntTSL 4 BASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 PRDX1P1-201ENST00000449329 596 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 CCNJP1-201ENST00000450600 1149 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AC118758.1-202ENST00000454719 225 ntBASIC7.05□□□□□ -1.28
HDDC3Q8N4P3 AL096803.1-201ENST00000456921 1021 ntBASIC7.05□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms