Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL353052.2-201ENST00000441459 2241 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 NSD2-224ENST00000514045 3964 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TMEM75-201ENST00000624314 2165 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 IFT22-201ENST00000315322 1130 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ANKS1B-201ENST00000329257 996 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ANKRD36P1-201ENST00000344424 659 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CD44-205ENST00000352818 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 RNA5SP27-201ENST00000363839 119 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 THEM5-201ENST00000368817 984 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC105402.1-201ENST00000413336 545 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CRIP1P3-201ENST00000416794 220 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL591846.2-201ENST00000425161 358 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 RPE-205ENST00000429907 925 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 NANOGP9-201ENST00000439890 892 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 RPL6P24-201ENST00000445338 864 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TNR-IT1-201ENST00000455447 630 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC018816.1-206ENST00000474544 455 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ROPN1B-207ENST00000511082 782 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 EIF3KP1-201ENST00000513279 656 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC100849.1-202ENST00000517949 562 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC110741.1-201ENST00000520149 582 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AP000445.1-201ENST00000526692 741 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AP000879.2-201ENST00000530525 497 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC090692.1-201ENST00000531569 541 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 KLRD1-210ENST00000543777 789 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 MUCL1-202ENST00000546809 439 ntAPPRIS ALT2 TSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC079384.1-201ENST00000548506 600 ntTSL 4 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC087897.1-201ENST00000550134 156 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL121820.1-201ENST00000556919 461 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CYP4A44P-201ENST00000569984 154 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC064805.1-203ENST00000577560 526 ntTSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 BOLA2P1-201ENST00000584794 232 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL512605.1-201ENST00000588215 1263 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC005262.1-201ENST00000588562 362 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 FXYD1-205ENST00000588607 619 ntAPPRIS P1 TSL 3 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 PRR13P3-201ENST00000603578 376 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC140658.6-201ENST00000603958 201 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 FP325318.1-201ENST00000616097 1263 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC021755.4-201ENST00000616620 456 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AC016582.1-202ENST00000636341 2982 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CRNDE-214ENST00000637011 865 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL136146.1-201ENST00000529830 1667 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 NUMB-223ENST00000556772 5172 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 DIS3L2-202ENST00000325385 3501 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 UBR4-202ENST00000375224 3475 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 MAPK10-204ENST00000395157 2665 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 TNPO3-202ENST00000471166 3019 ntTSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 ANKS1B-215ENST00000549493 3328 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 SLC2A3P2-201ENST00000331747 1480 ntBASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 THOC5-216ENST00000490103 4753 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 NT5DC1-201ENST00000319550 6923 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
TRAIPQ9BWF2 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 CSDE1-214ENST00000530886 3459 ntTSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 EEF1A1P3-201ENST00000417549 1385 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 LINC00347-202ENST00000594461 2371 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 SNX16-202ENST00000353788 3032 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 TAF12-202ENST00000373824 1334 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 NEK10-201ENST00000295720 2871 ntTSL 2 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PLCG2-201ENST00000359376 3819 ntTSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 RNU4-68P-201ENST00000364314 141 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 RNA5SP297-201ENST00000391029 113 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 NPPA-AS1-201ENST00000400892 936 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC226101.1-201ENST00000401483 387 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AL021331.1-201ENST00000402817 582 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 CNPY1-202ENST00000406197 560 ntTSL 5 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AL109918.1-202ENST00000406724 436 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AP000357.1-201ENST00000409926 1165 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC010385.1-201ENST00000412374 256 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 MTCO3P4-201ENST00000419236 787 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 GAPDHP46-201ENST00000424043 994 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 Z68868.1-201ENST00000429048 544 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AJ006995.1-201ENST00000433344 572 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 TMEM196-204ENST00000433641 768 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 FO393419.1-201ENST00000443746 355 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AC012355.1-201ENST00000450290 769 ntTSL 3 BASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 AL451074.1-202ENST00000453762 989 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 PTGES3P5-201ENST00000455109 434 ntBASIC8.63□□□□□ -1.03
TRAIPQ9BWF2 ZBTB20-AS4-201ENST00000472323 675 ntTSL 3 BASIC8.63□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.4 ms