Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LGALS17A-205ENST00000598736 1111 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AC018714.1-201ENST00000605028 208 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC055876.5-201ENST00000605667 259 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC092354.1-201ENST00000606057 376 ntBASIC7.88□□□□□ -1.15
MSX1P28360 CDC37L1-AS1-201ENST00000607997 463 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 STARD13-AS-224ENST00000608496 787 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 LINC02018-202ENST00000608707 445 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 AL592148.2-201ENST00000612210 372 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AL034428.1-202ENST00000613736 625 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AP005264.7-201ENST00000625003 745 ntBASIC7.88□□□□□ -1.15
MSX1P28360 AC012560.1-201ENST00000634930 459 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 Metazoa_SRP.211-201ENST00000635920 276 ntBASIC7.88□□□□□ -1.15
MSX1P28360 SMARCA2-202ENST00000324954 1781 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 THBS3-210ENST00000541576 3200 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 MS4A6A-203ENST00000426738 1736 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 AC016582.1-201ENST00000592640 1716 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 ASTE1-201ENST00000264992 2664 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 LINC01572-201ENST00000561611 2194 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 METTL7A-203ENST00000548553 4076 ntAPPRIS P1 TSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 COMMD6-205ENST00000406936 1628 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 DNAJC5G-204ENST00000406962 1562 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC7.88□□□□□ -1.15
MSX1P28360 ALDH6A1-202ENST00000553458 5499 ntAPPRIS P3 TSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 LINC01886-202ENST00000443205 1539 ntTSL 3 BASIC7.88□□□□□ -1.15
MSX1P28360 MANSC1-204ENST00000545735 1501 ntTSL 2 BASIC7.88□□□□□ -1.15
MSX1P28360 TMCO1-208ENST00000612311 4468 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
MSX1P28360 NOL4-201ENST00000261592 3957 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 DCLRE1B-201ENST00000369563 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 MATN2-208ENST00000520016 3495 ntAPPRIS P4 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 NPL-203ENST00000367553 2231 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 FRMD6-201ENST00000344768 2972 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 AC011447.6-201ENST00000623510 2598 ntBASIC7.87□□□□□ -1.15
MSX1P28360 CYP4A11-204ENST00000462347 1775 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 MTND4P12-201ENST00000498999 1377 ntBASIC7.87□□□□□ -1.15
MSX1P28360 MAP3K8-202ENST00000375321 2518 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 XIRP2-205ENST00000409605 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 OR6M2P-202ENST00000641780 2063 ntBASIC7.87□□□□□ -1.15
MSX1P28360 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 RNA5SP250-201ENST00000362534 119 ntBASIC7.87□□□□□ -1.15
MSX1P28360 RNU6-931P-201ENST00000363850 107 ntBASIC7.87□□□□□ -1.15
MSX1P28360 MORN5-201ENST00000373764 705 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
MSX1P28360 Y_RNA.554-201ENST00000384672 102 ntBASIC7.87□□□□□ -1.15
MSX1P28360 IGLV1-51-201ENST00000390290 389 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
MSX1P28360 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
MSX1P28360 FGF7P8-201ENST00000402994 292 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 AL358452.1-201ENST00000414995 800 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 CYCSP46-201ENST00000423569 204 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AL139158.1-201ENST00000424719 340 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 ATP5HP2-201ENST00000433885 485 ntBASIC7.87□□□□□ -1.15
MSX1P28360 LINC00444-201ENST00000435617 215 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 LYZL4-202ENST00000441172 838 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 MARK2P14-201ENST00000449657 628 ntBASIC7.87□□□□□ -1.15
MSX1P28360 OR7A15P-201ENST00000449848 1009 ntBASIC7.87□□□□□ -1.15
MSX1P28360 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 DBIL5P-202ENST00000453414 250 ntBASIC7.87□□□□□ -1.15
MSX1P28360 MTND1P11-201ENST00000456661 876 ntBASIC7.87□□□□□ -1.15
MSX1P28360 CDKN2AIPNLP1-201ENST00000460287 302 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC018638.4-201ENST00000465971 1150 ntBASIC7.87□□□□□ -1.15
MSX1P28360 TMED11P-201ENST00000479478 690 ntBASIC7.87□□□□□ -1.15
MSX1P28360 PIGA-205ENST00000482148 1092 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 RPL5P29-201ENST00000482972 894 ntBASIC7.87□□□□□ -1.15
MSX1P28360 GGTA1P-204ENST00000488429 1104 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC108941.1-201ENST00000502853 530 ntBASIC7.87□□□□□ -1.15
MSX1P28360 BX293995.1-201ENST00000502880 755 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC084024.2-201ENST00000503480 791 ntBASIC7.87□□□□□ -1.15
MSX1P28360 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 FAM92A1P2-202ENST00000504766 877 ntBASIC7.87□□□□□ -1.15
MSX1P28360 HSPE1P10-201ENST00000508631 558 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 AC098679.2-201ENST00000513067 365 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC7.87□□□□□ -1.15
MSX1P28360 RNA5SP460-201ENST00000516789 100 ntBASIC7.87□□□□□ -1.15
MSX1P28360 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
MSX1P28360 MRVI1-AS1-201ENST00000525578 829 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 AP002469.1-201ENST00000526011 1043 ntBASIC7.87□□□□□ -1.15
MSX1P28360 ZNF503-AS1-205ENST00000530606 549 ntTSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 AC078886.1-201ENST00000549144 554 ntBASIC7.87□□□□□ -1.15
MSX1P28360 SAXO2-204ENST00000565432 811 ntAPPRIS ALT2 TSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 AC068724.2-201ENST00000565685 532 ntTSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 AC010542.1-201ENST00000568430 555 ntTSL 4 BASIC7.87□□□□□ -1.15
MSX1P28360 AC005552.1-201ENST00000577556 662 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC098850.2-201ENST00000578710 686 ntTSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 RN7SL49P-201ENST00000581392 298 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC005730.3-201ENST00000583067 366 ntBASIC7.87□□□□□ -1.15
MSX1P28360 LINC00663-205ENST00000589508 432 ntTSL 3 BASIC7.87□□□□□ -1.15
MSX1P28360 PINLYP-206ENST00000599207 712 ntAPPRIS ALT2 TSL 5 BASIC7.87□□□□□ -1.15
MSX1P28360 AL117336.2-201ENST00000602435 335 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC090950.1-201ENST00000604625 830 ntBASIC7.87□□□□□ -1.15
MSX1P28360 AC009686.2-201ENST00000607017 577 ntBASIC7.87□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms