Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 CDK15-201ENST00000260967 1635 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 NBPF14-201ENST00000581201 2931 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 CNPY1-204ENST00000636446 1637 ntAPPRIS P5 TSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 GAPDHP19-201ENST00000431768 1005 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AL354714.5-201ENST00000450131 590 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 RN7SKP198-201ENST00000459286 306 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC027801.3-201ENST00000515049 698 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 RN7SKP11-201ENST00000517018 287 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC120036.3-201ENST00000517826 292 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC244034.2-201ENST00000562504 509 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC026458.1-201ENST00000564330 438 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC011447.2-201ENST00000592921 283 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC063962.1-201ENST00000608199 521 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AL358913.2-201ENST00000553881 1548 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 LRRC37A12P-201ENST00000454917 1801 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 AC110716.2-201ENST00000563865 3945 ntBASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 ZNF271P-201ENST00000399070 5124 ntTSL 2 BASIC7.1□□□□□ -1.27
HDDC3Q8N4P3 GLRA3-201ENST00000274093 8770 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC011379.1-201ENST00000508713 3025 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 PARD3-212ENST00000544292 2475 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 OR1C1-201ENST00000408896 1307 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 CD86-209ENST00000493101 1572 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 SERPINB11-205ENST00000544088 1846 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 GABRA2-215ENST00000540012 2588 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 MS4A12-201ENST00000016913 1167 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 MIR323B-201ENST00000385269 82 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 RNA5SP176-201ENST00000390956 110 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 SUMO2P13-201ENST00000403109 272 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 PTPN2P1-201ENST00000423212 1072 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC114755.4-201ENST00000439114 443 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC092164.1-203ENST00000444501 723 ntTSL 3 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 CLDN34-201ENST00000445307 995 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 RN7SL870P-201ENST00000460111 296 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 CENPK-211ENST00000510693 1040 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 IGLC4-201ENST00000517690 248 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 FBXO16-207ENST00000518734 995 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 KCNU1-202ENST00000518904 334 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC090888.3-201ENST00000558917 509 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 EIF4A3P1-201ENST00000578499 647 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 MIR6849-201ENST00000618543 69 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 AC018688.1-201ENST00000636528 1754 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 OR1L8-202ENST00000641027 2024 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 FLJ42393-201ENST00000623801 2270 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 HDAC9-214ENST00000441542 3210 ntAPPRIS P4 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 MKI67P1-201ENST00000604297 1460 ntBASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
HDDC3Q8N4P3 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.28
HDDC3Q8N4P3 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC7.09□□□□□ -1.28
HDDC3Q8N4P3 AL391704.1-201ENST00000422206 2368 ntTSL 1 (best) BASIC7.09□□□□□ -1.28
HDDC3Q8N4P3 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC7.08□□□□□ -1.28
HDDC3Q8N4P3 PPBPP2-201ENST00000513150 1362 ntBASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms