Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 AP001271.2-201ENST00000624018 1556 ntBASIC19.91■□□□□ 0.78
TREX1Q9NSU2 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.91■□□□□ 0.78
TREX1Q9NSU2 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.9■□□□□ 0.78
TREX1Q9NSU2 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TREX1Q9NSU2 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 DUSP5P2-201ENST00000426873 1033 ntBASIC19.89■□□□□ 0.77
TREX1Q9NSU2 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
TREX1Q9NSU2 PHGDH-210ENST00000641115 1638 ntBASIC19.89■□□□□ 0.77
TREX1Q9NSU2 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 AC092666.2-201ENST00000613287 246 ntBASIC19.88■□□□□ 0.77
TREX1Q9NSU2 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.88■□□□□ 0.77
TREX1Q9NSU2 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 AC091874.3-201ENST00000512672 1195 ntBASIC19.87■□□□□ 0.77
TREX1Q9NSU2 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.87■□□□□ 0.77
TREX1Q9NSU2 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
TREX1Q9NSU2 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.86■□□□□ 0.77
TREX1Q9NSU2 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
TREX1Q9NSU2 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms