Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 KRT8P9-201ENST00000558927 1449 ntBASIC23.04■■□□□ 1.28
RPAP3Q9H6T3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.04■■□□□ 1.28
RPAP3Q9H6T3 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
RPAP3Q9H6T3 AC007225.1-201ENST00000566331 1836 ntBASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 AC026310.3-201ENST00000625186 2373 ntBASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 TK2-213ENST00000563369 882 ntTSL 5 BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
RPAP3Q9H6T3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 AC079834.2-201ENST00000609776 1949 ntBASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 MIR6786-201ENST00000616843 113 ntBASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 AP006587.1-201ENST00000534129 1502 ntBASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 LINC00565-201ENST00000562710 2331 ntBASIC23.02■■□□□ 1.28
RPAP3Q9H6T3 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 KRT16P1-201ENST00000399124 1418 ntBASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 MIR1238-201ENST00000408483 83 ntBASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
RPAP3Q9H6T3 BID-203ENST00000399765 1879 ntTSL 2 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
RPAP3Q9H6T3 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
RPAP3Q9H6T3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 AC116562.2-201ENST00000507042 360 ntBASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.99■■□□□ 1.27
RPAP3Q9H6T3 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 AC116351.2-201ENST00000606540 1585 ntBASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 AL390955.1-201ENST00000428694 934 ntBASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 RN7SL850P-201ENST00000579959 291 ntBASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 AC145285.6-201ENST00000604632 637 ntBASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 GLDC-219ENST00000640208 420 ntTSL 2 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RPAP3Q9H6T3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.97■■□□□ 1.27
RPAP3Q9H6T3 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RPAP3Q9H6T3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
RPAP3Q9H6T3 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms