Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 AL121829.2-201ENST00000620908 328 ntBASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CCDC3Q9BQI4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.46■□□□□ 0.71
CCDC3Q9BQI4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 FAM210CP-201ENST00000445714 574 ntBASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 AC124283.5-201ENST00000624661 1809 ntBASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
CCDC3Q9BQI4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 TSPY15P-201ENST00000457163 923 ntBASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.44■□□□□ 0.7
CCDC3Q9BQI4 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 FP700111.2-201ENST00000619190 1892 ntBASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.43■□□□□ 0.7
CCDC3Q9BQI4 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms