Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 AC005829.2-201ENST00000571422 1056 ntBASIC17.72■□□□□ 0.43
USB1Q9BQ65 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC17.72■□□□□ 0.43
USB1Q9BQ65 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USB1Q9BQ65 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 AC023632.3-201ENST00000521633 145 ntBASIC17.71■□□□□ 0.43
USB1Q9BQ65 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.71■□□□□ 0.43
USB1Q9BQ65 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
USB1Q9BQ65 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 AC008403.3-201ENST00000598924 454 ntBASIC17.7■□□□□ 0.42
USB1Q9BQ65 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
USB1Q9BQ65 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
USB1Q9BQ65 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 AL157384.1-201ENST00000445995 2473 ntBASIC17.69■□□□□ 0.42
USB1Q9BQ65 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 PRORSD1P-201ENST00000295112 541 ntBASIC17.69■□□□□ 0.42
USB1Q9BQ65 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 POM121L13P-201ENST00000422362 380 ntBASIC17.69■□□□□ 0.42
USB1Q9BQ65 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 SOX15-203ENST00000570788 1093 ntBASIC17.69■□□□□ 0.42
USB1Q9BQ65 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
USB1Q9BQ65 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.69■□□□□ 0.42
USB1Q9BQ65 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
USB1Q9BQ65 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
USB1Q9BQ65 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USB1Q9BQ65 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USB1Q9BQ65 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.68■□□□□ 0.42
USB1Q9BQ65 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USB1Q9BQ65 RER1-204ENST00000378518 522 ntTSL 3 BASIC17.68■□□□□ 0.42
USB1Q9BQ65 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USB1Q9BQ65 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.68■□□□□ 0.42
USB1Q9BQ65 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms