Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 AC007225.1-201ENST00000566331 1836 ntBASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
HDDC3Q8N4P3 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 KRT8P17-201ENST00000453110 1448 ntBASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 TMPOP1-202ENST00000424642 1267 ntBASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 CD177P1-201ENST00000606252 935 ntBASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
HDDC3Q8N4P3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 DPP3P2-201ENST00000416030 1696 ntBASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 AC012306.2-201ENST00000609350 630 ntBASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
HDDC3Q8N4P3 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 AL445228.2-201ENST00000605589 952 ntBASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.03■□□□□ 0.8
HDDC3Q8N4P3 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 KRT16P5-201ENST00000455284 522 ntBASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
HDDC3Q8N4P3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.02■□□□□ 0.79
HDDC3Q8N4P3 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.02■□□□□ 0.79
HDDC3Q8N4P3 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
HDDC3Q8N4P3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 ARMC10P1-201ENST00000313754 855 ntBASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
HDDC3Q8N4P3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms