Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 KRASP1-201ENST00000407852 552 ntBASIC18.5■□□□□ 0.55
BEST3Q8N1M1 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
BEST3Q8N1M1 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
BEST3Q8N1M1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 FP700111.2-201ENST00000619190 1892 ntBASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 AC133681.1-201ENST00000465482 601 ntBASIC18.48■□□□□ 0.55
BEST3Q8N1M1 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 Z99916.2-201ENST00000604037 246 ntBASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 AC124283.5-201ENST00000624661 1809 ntBASIC18.48■□□□□ 0.55
BEST3Q8N1M1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
BEST3Q8N1M1 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 AC006128.1-201ENST00000624704 1661 ntBASIC18.47■□□□□ 0.55
BEST3Q8N1M1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 PRKY-204ENST00000533551 1019 ntBASIC18.47■□□□□ 0.55
BEST3Q8N1M1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.47■□□□□ 0.55
BEST3Q8N1M1 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 AC110285.5-201ENST00000611501 352 ntBASIC18.46■□□□□ 0.55
BEST3Q8N1M1 AC005229.4-201ENST00000610085 2198 ntBASIC18.46■□□□□ 0.55
BEST3Q8N1M1 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
BEST3Q8N1M1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms