Protein–RNA interactions for Protein: Q04214

TY1B-MR1, Transposon Ty1-MR1 Gag-Pol polyprotein, yeastyeast

Predictions only

Length 1,755 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY1B-MR1Q04214 YPR197CYPR197C 564 nt-2.56□□□□□ -2.82
TY1B-MR1Q04214 YJR157WYJR157W 363 nt-2.58□□□□□ -2.82
TY1B-MR1Q04214 YAL016C-BYAL016C-B 186 nt-2.59□□□□□ -2.82
TY1B-MR1Q04214 YDR524W-CYDR524W-C 90 nt-2.59□□□□□ -2.82
TY1B-MR1Q04214 YOR381W-AYOR381W-A 168 nt-2.59□□□□□ -2.82
TY1B-MR1Q04214 snR41snR41 95 nt-2.59□□□□□ -2.82
TY1B-MR1Q04214 Q0255Q0255 1419 nt-2.61□□□□□ -2.83
TY1B-MR1Q04214 YLR406C-AYLR406C-A 150 nt-2.62□□□□□ -2.83
TY1B-MR1Q04214 ATP19YOL077W-A 207 nt-2.63□□□□□ -2.83
TY1B-MR1Q04214 YOR316C-AYOR316C-A 210 nt-2.63□□□□□ -2.83
TY1B-MR1Q04214 YBR178WYBR178W 375 nt-2.63□□□□□ -2.83
TY1B-MR1Q04214 YLR120W-AYLR120W-A 102 nt-2.64□□□□□ -2.83
TY1B-MR1Q04214 tW(UCA)QtW(UCA)Q 74 nt-2.66□□□□□ -2.84
TY1B-MR1Q04214 YKL123WYKL123W 381 nt-2.66□□□□□ -2.84
TY1B-MR1Q04214 YHR180C-BYHR180C-B 105 nt-2.69□□□□□ -2.84
TY1B-MR1Q04214 YNL122CYNL122C 348 nt-2.69□□□□□ -2.84
TY1B-MR1Q04214 HTL1YCR020W-B 237 nt-2.69□□□□□ -2.84
TY1B-MR1Q04214 YOR329W-AYOR329W-A 210 nt-2.69□□□□□ -2.84
TY1B-MR1Q04214 YEL014CYEL014C 306 nt-2.71□□□□□ -2.84
TY1B-MR1Q04214 YGL041CYGL041C 204 nt-2.71□□□□□ -2.84
TY1B-MR1Q04214 BIL1YOR304C-A 231 nt-2.72□□□□□ -2.85
TY1B-MR1Q04214 YLR285C-AYLR285C-A 171 nt-2.74□□□□□ -2.85
TY1B-MR1Q04214 YLR299C-AYLR299C-A 93 nt-2.75□□□□□ -2.85
TY1B-MR1Q04214 snR78snR78 87 nt-2.78□□□□□ -2.85
TY1B-MR1Q04214 snR55snR55 98 nt-2.84□□□□□ -2.86
TY1B-MR1Q04214 YER181CYER181C 324 nt-2.9□□□□□ -2.87
TY1B-MR1Q04214 YAL063C-AYAL063C-A 291 nt-2.91□□□□□ -2.88
TY1B-MR1Q04214 YJR162CYJR162C 351 nt-2.92□□□□□ -2.88
TY1B-MR1Q04214 YNL337WYNL337W 255 nt-2.92□□□□□ -2.88
TY1B-MR1Q04214 snR80snR80 171 nt-2.95□□□□□ -2.88
TY1B-MR1Q04214 YDR183C-AYDR183C-A 258 nt-2.97□□□□□ -2.88
TY1B-MR1Q04214 YPR012WYPR012W 255 nt-2.97□□□□□ -2.89
TY1B-MR1Q04214 YOL155W-AYOL155W-A 135 nt-2.98□□□□□ -2.89
TY1B-MR1Q04214 YDR413CYDR413C 576 nt-2.99□□□□□ -2.89
TY1B-MR1Q04214 YLR222C-AYLR222C-A 231 nt-2.99□□□□□ -2.89
TY1B-MR1Q04214 YOR102WYOR102W 351 nt-2.99□□□□□ -2.89
TY1B-MR1Q04214 snR6snR6 112 nt-3□□□□□ -2.89
TY1B-MR1Q04214 YKL106C-AYKL106C-A 120 nt-3.02□□□□□ -2.89
TY1B-MR1Q04214 YBR131C-AYBR131C-A 90 nt-3.05□□□□□ -2.9
TY1B-MR1Q04214 YDR524C-AYDR524C-A 120 nt-3.05□□□□□ -2.9
TY1B-MR1Q04214 YKL118WYKL118W 312 nt-3.06□□□□□ -2.9
TY1B-MR1Q04214 YGR035CYGR035C 351 nt-3.07□□□□□ -2.9
TY1B-MR1Q04214 tF(GAA)QtF(GAA)Q 75 nt-3.08□□□□□ -2.9
TY1B-MR1Q04214 YNR025CYNR025C 360 nt-3.14□□□□□ -2.91
TY1B-MR1Q04214 snR48snR48 113 nt-3.16□□□□□ -2.92
TY1B-MR1Q04214 snR73snR73 106 nt-3.17□□□□□ -2.92
TY1B-MR1Q04214 YOR335W-AYOR335W-A 81 nt-3.18□□□□□ -2.92
TY1B-MR1Q04214 YJL150WYJL150W 303 nt-3.2□□□□□ -2.92
TY1B-MR1Q04214 YGL188C-AYGL188C-A 141 nt-3.21□□□□□ -2.92
TY1B-MR1Q04214 RPL41AYDL184C 78 nt-3.23□□□□□ -2.93
TY1B-MR1Q04214 YPL038W-AYPL038W-A 192 nt-3.23□□□□□ -2.93
TY1B-MR1Q04214 YBR109W-AYBR109W-A 225 nt-3.26□□□□□ -2.93
TY1B-MR1Q04214 RPL41BYDL133C-A 78 nt-3.28□□□□□ -2.93
TY1B-MR1Q04214 tL(UAA)QtL(UAA)Q 85 nt-3.28□□□□□ -2.93
TY1B-MR1Q04214 YNL097C-BYNL097C-B 123 nt-3.28□□□□□ -2.93
TY1B-MR1Q04214 YBR296C-AYBR296C-A 120 nt-3.32□□□□□ -2.94
TY1B-MR1Q04214 YNL198CYNL198C 303 nt-3.34□□□□□ -2.94
TY1B-MR1Q04214 GIM4YEL003W 336 nt-3.36□□□□□ -2.95
TY1B-MR1Q04214 snR38snR38 95 nt-3.36□□□□□ -2.95
TY1B-MR1Q04214 snR56snR56 88 nt-3.38□□□□□ -2.95
TY1B-MR1Q04214 YDR406W-AYDR406W-A 246 nt-3.46□□□□□ -2.96
TY1B-MR1Q04214 RPL39YJL189W 156 nt-3.46□□□□□ -2.96
TY1B-MR1Q04214 tR(UCU)Q1tR(UCU)Q1 73 nt-3.51□□□□□ -2.97
TY1B-MR1Q04214 YOR302WYOR302W 78 nt-3.53□□□□□ -2.98
TY1B-MR1Q04214 YNL277W-AYNL277W-A 189 nt-3.58□□□□□ -2.98
TY1B-MR1Q04214 YHL015W-AYHL015W-A 84 nt-3.59□□□□□ -2.98
TY1B-MR1Q04214 snR87snR87 109 nt-3.61□□□□□ -2.99
TY1B-MR1Q04214 snR52snR52 92 nt-3.63□□□□□ -2.99
TY1B-MR1Q04214 tV(UAC)QtV(UAC)Q 76 nt-3.65□□□□□ -2.99
TY1B-MR1Q04214 SOM1YEL059C-A 225 nt-3.67□□□□□ -3
TY1B-MR1Q04214 snR85snR85 171 nt-3.7□□□□□ -3
TY1B-MR1Q04214 YDL240C-AYDL240C-A 138 nt-3.7□□□□□ -3
TY1B-MR1Q04214 YCR095W-AYCR095W-A 159 nt-3.71□□□□□ -3
TY1B-MR1Q04214 YDL114W-AYDL114W-A 114 nt-3.74□□□□□ -3.01
TY1B-MR1Q04214 YEL050W-AYEL050W-A 192 nt-3.74□□□□□ -3.01
TY1B-MR1Q04214 YBL071C-BYBL071C-B 99 nt-3.77□□□□□ -3.01
TY1B-MR1Q04214 YDR157WYDR157W 402 nt-3.79□□□□□ -3.02
TY1B-MR1Q04214 YOL164W-AYOL164W-A 183 nt-3.8□□□□□ -3.02
TY1B-MR1Q04214 snR47snR47 99 nt-3.81□□□□□ -3.02
TY1B-MR1Q04214 YGR151CYGR151C 336 nt-3.83□□□□□ -3.02
TY1B-MR1Q04214 snR58snR58 96 nt-3.91□□□□□ -3.04
TY1B-MR1Q04214 YPL152W-AYPL152W-A 99 nt-4.07□□□□□ -3.06
TY1B-MR1Q04214 YKL225WYKL225W 348 nt-4.08□□□□□ -3.06
TY1B-MR1Q04214 YAL037C-AYAL037C-A 93 nt-4.09□□□□□ -3.06
TY1B-MR1Q04214 YJL136W-AYJL136W-A 84 nt-4.09□□□□□ -3.06
TY1B-MR1Q04214 YBL053WYBL053W 375 nt-4.1□□□□□ -3.07
TY1B-MR1Q04214 YDR118W-AYDR118W-A 117 nt-4.14□□□□□ -3.07
TY1B-MR1Q04214 YHR175W-AYHR175W-A 150 nt-4.15□□□□□ -3.07
TY1B-MR1Q04214 YBL100W-CYBL100W-C 120 nt-4.15□□□□□ -3.07
TY1B-MR1Q04214 snR65snR65 100 nt-4.18□□□□□ -3.08
TY1B-MR1Q04214 tS(GCU)Q1tS(GCU)Q1 86 nt-4.19□□□□□ -3.08
TY1B-MR1Q04214 YKL096C-BYKL096C-B 150 nt-4.19□□□□□ -3.08
TY1B-MR1Q04214 SPG3YDR504C 384 nt-4.21□□□□□ -3.08
TY1B-MR1Q04214 YDL159W-AYDL159W-A 132 nt-4.27□□□□□ -3.09
TY1B-MR1Q04214 Q0017Q0017 162 nt-4.3□□□□□ -3.1
TY1B-MR1Q04214 YGR122C-AYGR122C-A 129 nt-4.35□□□□□ -3.11
TY1B-MR1Q04214 YDR034C-AYDR034C-A 177 nt-4.53□□□□□ -3.14
TY1B-MR1Q04214 YNL170WYNL170W 396 nt-4.58□□□□□ -3.14
TY1B-MR1Q04214 VAR1Q0140 1197 nt-4.63□□□□□ -3.15
TY1B-MR1Q04214 tC(GCA)QtC(GCA)Q 76 nt-4.7□□□□□ -3.16
Retrieved 100 of 7,029 protein–RNA pairs in 28.1 ms