Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGCS2P54868 AC113347.1-201ENST00000413321 391 ntBASIC23.12■■□□□ 1.29
HMGCS2P54868 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC23.12■■□□□ 1.29
HMGCS2P54868 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGCS2P54868 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGCS2P54868 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
HMGCS2P54868 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC23.12■■□□□ 1.29
HMGCS2P54868 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
HMGCS2P54868 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.11■■□□□ 1.29
HMGCS2P54868 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC23.11■■□□□ 1.29
HMGCS2P54868 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC23.11■■□□□ 1.29
HMGCS2P54868 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC23.11■■□□□ 1.29
HMGCS2P54868 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC23.11■■□□□ 1.29
HMGCS2P54868 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
HMGCS2P54868 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.11■■□□□ 1.29
HMGCS2P54868 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 AP006587.1-201ENST00000534129 1502 ntBASIC23.1■■□□□ 1.29
HMGCS2P54868 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC23.1■■□□□ 1.29
HMGCS2P54868 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC23.1■■□□□ 1.29
HMGCS2P54868 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGCS2P54868 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC23.1■■□□□ 1.29
HMGCS2P54868 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGCS2P54868 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGCS2P54868 NT5C-211ENST00000582170 653 ntTSL 3 BASIC23.1■■□□□ 1.29
HMGCS2P54868 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.1■■□□□ 1.29
HMGCS2P54868 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.1■■□□□ 1.29
HMGCS2P54868 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC23.1■■□□□ 1.29
HMGCS2P54868 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
HMGCS2P54868 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 DPP3P2-201ENST00000416030 1696 ntBASIC23.09■■□□□ 1.29
HMGCS2P54868 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC23.09■■□□□ 1.29
HMGCS2P54868 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGCS2P54868 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC23.09■■□□□ 1.29
HMGCS2P54868 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC23.09■■□□□ 1.29
HMGCS2P54868 AC012676.1-201ENST00000574705 1949 ntBASIC23.09■■□□□ 1.29
HMGCS2P54868 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC23.09■■□□□ 1.29
HMGCS2P54868 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
HMGCS2P54868 KRT18P22-201ENST00000402024 1347 ntBASIC23.08■■□□□ 1.29
HMGCS2P54868 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
HMGCS2P54868 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGCS2P54868 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.08■■□□□ 1.29
HMGCS2P54868 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.08■■□□□ 1.29
HMGCS2P54868 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC23.08■■□□□ 1.29
HMGCS2P54868 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC23.08■■□□□ 1.29
HMGCS2P54868 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC23.08■■□□□ 1.29
HMGCS2P54868 C1QL1P1-201ENST00000568105 661 ntBASIC23.08■■□□□ 1.29
HMGCS2P54868 AL590326.2-201ENST00000625139 305 ntBASIC23.08■■□□□ 1.29
HMGCS2P54868 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
HMGCS2P54868 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HMGCS2P54868 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.08■■□□□ 1.29
HMGCS2P54868 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC23.08■■□□□ 1.28
HMGCS2P54868 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HMGCS2P54868 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
HMGCS2P54868 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.08■■□□□ 1.28
HMGCS2P54868 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HMGCS2P54868 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
HMGCS2P54868 TERF1P1-201ENST00000311003 1181 ntBASIC23.07■■□□□ 1.28
HMGCS2P54868 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC23.07■■□□□ 1.28
HMGCS2P54868 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.07■■□□□ 1.28
HMGCS2P54868 AL031985.4-201ENST00000642138 673 ntBASIC23.07■■□□□ 1.28
HMGCS2P54868 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
HMGCS2P54868 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HMGCS2P54868 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
HMGCS2P54868 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.06■■□□□ 1.28
HMGCS2P54868 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HMGCS2P54868 CRAT-202ENST00000393384 973 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGCS2P54868 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGCS2P54868 MESTP1-201ENST00000404287 994 ntBASIC23.06■■□□□ 1.28
HMGCS2P54868 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC23.06■■□□□ 1.28
HMGCS2P54868 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms