Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 snR128snR128 126 nt-0.05□□□□□ -2.42
YNL040WP53960 tM(CAU)Q2tM(CAU)Q2 78 nt-0.07□□□□□ -2.42
YNL040WP53960 YLR342W-AYLR342W-A 174 nt-0.08□□□□□ -2.42
YNL040WP53960 YOR329W-AYOR329W-A 210 nt-0.09□□□□□ -2.42
YNL040WP53960 YJL113WYJL113W 4647 nt-0.1□□□□□ -2.43
YNL040WP53960 YGR146C-AYGR146C-A 162 nt-0.13□□□□□ -2.43
YNL040WP53960 snR39BsnR39B 96 nt-0.13□□□□□ -2.43
YNL040WP53960 YDR406W-AYDR406W-A 246 nt-0.14□□□□□ -2.43
YNL040WP53960 YGR164WYGR164W 336 nt-0.14□□□□□ -2.43
YNL040WP53960 YJL077W-AYJL077W-A 87 nt-0.14□□□□□ -2.43
YNL040WP53960 snR48snR48 113 nt-0.14□□□□□ -2.43
YNL040WP53960 snR69snR69 101 nt-0.19□□□□□ -2.44
YNL040WP53960 tQ(UUG)QtQ(UUG)Q 76 nt-0.2□□□□□ -2.44
YNL040WP53960 YMR046W-AYMR046W-A 129 nt-0.2□□□□□ -2.44
YNL040WP53960 TFB5YDR079C-A 219 nt-0.21□□□□□ -2.44
YNL040WP53960 PMP2YEL017C-A 132 nt-0.21□□□□□ -2.44
YNL040WP53960 SBH2YER019C-A 267 nt-0.21□□□□□ -2.44
YNL040WP53960 tL(UAA)QtL(UAA)Q 85 nt-0.21□□□□□ -2.44
YNL040WP53960 YDL007C-AYDL007C-A 258 nt-0.22□□□□□ -2.44
YNL040WP53960 YNL067W-BYNL067W-B 141 nt-0.22□□□□□ -2.44
YNL040WP53960 SPG3YDR504C 384 nt-0.23□□□□□ -2.45
YNL040WP53960 YHL015W-AYHL015W-A 84 nt-0.23□□□□□ -2.45
YNL040WP53960 YOR102WYOR102W 351 nt-0.23□□□□□ -2.45
YNL040WP53960 YJL150WYJL150W 303 nt-0.24□□□□□ -2.45
YNL040WP53960 YML100W-AYML100W-A 174 nt-0.24□□□□□ -2.45
YNL040WP53960 JLP2YMR132C 627 nt-0.25□□□□□ -2.45
YNL040WP53960 RDS3YPR094W 324 nt-0.25□□□□□ -2.45
YNL040WP53960 YNL205CYNL205C 423 nt-0.26□□□□□ -2.45
YNL040WP53960 YER090C-AYER090C-A 90 nt-0.27□□□□□ -2.45
YNL040WP53960 tM(CAU)Q1tM(CAU)Q1 76 nt-0.29□□□□□ -2.46
YNL040WP53960 SEC10YLR166C 2616 nt-0.29□□□□□ -2.46
YNL040WP53960 tD(GUC)QtD(GUC)Q 75 nt-0.3□□□□□ -2.46
YNL040WP53960 YIL071W-AYIL071W-A 477 nt-0.3□□□□□ -2.46
YNL040WP53960 YNL198CYNL198C 303 nt-0.3□□□□□ -2.46
YNL040WP53960 YNL266WYNL266W 420 nt-0.33□□□□□ -2.46
YNL040WP53960 snR50snR50 90 nt-0.33□□□□□ -2.46
YNL040WP53960 tA(UGC)QtA(UGC)Q 76 nt-0.35□□□□□ -2.47
YNL040WP53960 YBL053WYBL053W 375 nt-0.35□□□□□ -2.47
YNL040WP53960 YLR286W-AYLR286W-A 135 nt-0.36□□□□□ -2.47
YNL040WP53960 YBR178WYBR178W 375 nt-0.36□□□□□ -2.47
YNL040WP53960 PAU9YBL108C-A 129 nt-0.37□□□□□ -2.47
YNL040WP53960 YDL159C-BYDL159C-B 177 nt-0.39□□□□□ -2.47
YNL040WP53960 YLR466C-BYLR466C-B 117 nt-0.44□□□□□ -2.48
YNL040WP53960 snR67snR67 82 nt-0.45□□□□□ -2.48
YNL040WP53960 snR33snR33 183 nt-0.45□□□□□ -2.48
YNL040WP53960 YBR196C-AYBR196C-A 150 nt-0.45□□□□□ -2.48
YNL040WP53960 SOM1YEL059C-A 225 nt-0.46□□□□□ -2.48
YNL040WP53960 tT(UGU)G1tT(UGU)G1 72 nt-0.46□□□□□ -2.48
YNL040WP53960 tT(UGU)G2tT(UGU)G2 72 nt-0.46□□□□□ -2.48
YNL040WP53960 tT(UGU)PtT(UGU)P 72 nt-0.46□□□□□ -2.48
YNL040WP53960 YCR095W-AYCR095W-A 159 nt-0.47□□□□□ -2.48
YNL040WP53960 YHL009W-BYHL009W-B 5409 nt-0.48□□□□□ -2.49
YNL040WP53960 YGR151CYGR151C 336 nt-0.48□□□□□ -2.49
YNL040WP53960 YLR299C-AYLR299C-A 93 nt-0.48□□□□□ -2.49
YNL040WP53960 URB1YKL014C 5295 nt-0.5□□□□□ -2.49
YNL040WP53960 SKI7YOR076C 2244 nt-0.53□□□□□ -2.49
YNL040WP53960 YNL338WYNL338W 159 nt-0.54□□□□□ -2.5
YNL040WP53960 YNL337WYNL337W 255 nt-0.55□□□□□ -2.5
YNL040WP53960 snR161snR161 161 nt-0.55□□□□□ -2.5
YNL040WP53960 Q0032Q0032 291 nt-0.61□□□□□ -2.51
YNL040WP53960 tP(UGG)QtP(UGG)Q 72 nt-0.61□□□□□ -2.51
YNL040WP53960 YML054C-AYML054C-A 159 nt-0.62□□□□□ -2.51
YNL040WP53960 YCL001W-BYCL001W-B 255 nt-0.63□□□□□ -2.51
YNL040WP53960 YHR180C-BYHR180C-B 105 nt-0.65□□□□□ -2.51
YNL040WP53960 YGL007C-AYGL007C-A 87 nt-0.66□□□□□ -2.52
YNL040WP53960 YOL083C-AYOL083C-A 141 nt-0.75□□□□□ -2.53
YNL040WP53960 YBR223W-AYBR223W-A 120 nt-0.75□□□□□ -2.53
YNL040WP53960 YBL071C-BYBL071C-B 99 nt-0.76□□□□□ -2.53
YNL040WP53960 snR77snR77 88 nt-0.78□□□□□ -2.53
YNL040WP53960 YAL037C-AYAL037C-A 93 nt-0.79□□□□□ -2.54
YNL040WP53960 YOL164W-AYOL164W-A 183 nt-0.81□□□□□ -2.54
YNL040WP53960 YOR376W-AYOR376W-A 156 nt-0.81□□□□□ -2.54
YNL040WP53960 YBR109W-AYBR109W-A 225 nt-0.81□□□□□ -2.54
YNL040WP53960 RPL41AYDL184C 78 nt-0.82□□□□□ -2.54
YNL040WP53960 YBR296C-AYBR296C-A 120 nt-0.82□□□□□ -2.54
YNL040WP53960 CDC65tQ(CUG)M 72 nt-0.84□□□□□ -2.54
YNL040WP53960 YOR225WYOR225W 330 nt-0.84□□□□□ -2.54
YNL040WP53960 snR81snR81 201 nt-0.85□□□□□ -2.55
YNL040WP53960 YKL106C-AYKL106C-A 120 nt-0.87□□□□□ -2.55
YNL040WP53960 YLR294CYLR294C 330 nt-0.87□□□□□ -2.55
YNL040WP53960 tY(GUA)QtY(GUA)Q 84 nt-0.88□□□□□ -2.55
YNL040WP53960 snR38snR38 95 nt-0.89□□□□□ -2.55
YNL040WP53960 YMR315W-AYMR315W-A 108 nt-0.9□□□□□ -2.55
YNL040WP53960 YBL100W-CYBL100W-C 120 nt-0.9□□□□□ -2.55
YNL040WP53960 YGR240C-AYGR240C-A 201 nt-0.91□□□□□ -2.56
YNL040WP53960 YOR316C-AYOR316C-A 210 nt-0.91□□□□□ -2.56
YNL040WP53960 snR47snR47 99 nt-0.91□□□□□ -2.56
YNL040WP53960 YNL103W-AYNL103W-A 90 nt-0.98□□□□□ -2.57
YNL040WP53960 YNL170WYNL170W 396 nt-0.98□□□□□ -2.57
YNL040WP53960 snR61snR61 90 nt-1□□□□□ -2.57
YNL040WP53960 YGL041C-BYGL041C-B 183 nt-1.01□□□□□ -2.57
YNL040WP53960 tS(GCU)Q1tS(GCU)Q1 86 nt-1.05□□□□□ -2.58
YNL040WP53960 YOR309CYOR309C 381 nt-1.05□□□□□ -2.58
YNL040WP53960 YKL225WYKL225W 348 nt-1.08□□□□□ -2.58
YNL040WP53960 YNR077CYNR077C 255 nt-1.08□□□□□ -2.58
YNL040WP53960 ATP8Q0080 147 nt-1.09□□□□□ -2.58
YNL040WP53960 YDR034C-AYDR034C-A 177 nt-1.15□□□□□ -2.59
YNL040WP53960 snR62snR62 100 nt-1.16□□□□□ -2.6
YNL040WP53960 snR6snR6 112 nt-1.23□□□□□ -2.61
YNL040WP53960 YOR335W-AYOR335W-A 81 nt-1.24□□□□□ -2.61
Retrieved 100 of 7,029 protein–RNA pairs in 135.7 ms