Protein–RNA interactions for Protein: P49686

NUP42, Nucleoporin NUP42, yeastyeast

Known RBP Predictions only

Length 430 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
NUP42P49686 YHR214C-BYHR214C-B 5382 nt1.57□□□□□ -2.16
NUP42P49686 YDR371C-AYDR371C-A 105 nt1.56□□□□□ -2.16
NUP42P49686 MEC1YBR136W 7107 nt1.51□□□□□ -2.17
NUP42P49686 SPC110YDR356W 2835 nt1.49□□□□□ -2.17
NUP42P49686 LTE1YAL024C 4308 nt1.47□□□□□ -2.17
NUP42P49686 SCC2YDR180W 4482 nt1.46□□□□□ -2.18
NUP42P49686 SKI7YOR076C 2244 nt1.45□□□□□ -2.18
NUP42P49686 YOR093CYOR093C 4947 nt1.45□□□□□ -2.18
NUP42P49686 CCH1YGR217W 6120 nt1.44□□□□□ -2.18
NUP42P49686 snR38snR38 95 nt1.44□□□□□ -2.18
NUP42P49686 YER090C-AYER090C-A 90 nt1.43□□□□□ -2.18
NUP42P49686 MLP2YIL149C 5040 nt1.42□□□□□ -2.18
NUP42P49686 NUP192YJL039C 5052 nt1.41□□□□□ -2.18
NUP42P49686 YNL284C-BYNL284C-B 5268 nt1.41□□□□□ -2.18
NUP42P49686 YPR117WYPR117W 7470 nt1.39□□□□□ -2.19
NUP42P49686 RKR1YMR247C 4689 nt1.37□□□□□ -2.19
NUP42P49686 YOR192C-BYOR192C-B 5313 nt1.37□□□□□ -2.19
NUP42P49686 AI1Q0050 2505 nt1.37□□□□□ -2.19
NUP42P49686 PET111YMR257C 2403 nt1.36□□□□□ -2.19
NUP42P49686 HKR1YDR420W 5409 nt1.35□□□□□ -2.19
NUP42P49686 YKL096C-BYKL096C-B 150 nt1.33□□□□□ -2.2
NUP42P49686 YLR149C-AYLR149C-A 87 nt1.33□□□□□ -2.2
NUP42P49686 YDL159W-AYDL159W-A 132 nt1.31□□□□□ -2.2
NUP42P49686 VAM6YDL077C 3150 nt1.28□□□□□ -2.21
NUP42P49686 DNF3YMR162C 4971 nt1.28□□□□□ -2.21
NUP42P49686 snR67snR67 82 nt1.27□□□□□ -2.21
NUP42P49686 YGR122C-AYGR122C-A 129 nt1.27□□□□□ -2.21
NUP42P49686 tQ(UUG)E2tQ(UUG)E2 72 nt1.26□□□□□ -2.21
NUP42P49686 YMR272W-BYMR272W-B 108 nt1.25□□□□□ -2.21
NUP42P49686 MLP1YKR095W 5628 nt1.24□□□□□ -2.21
NUP42P49686 PAU24YBR301W 363 nt1.22□□□□□ -2.21
NUP42P49686 BEM2YER155C 6504 nt1.18□□□□□ -2.22
NUP42P49686 DOP1YDR141C 5097 nt1.12□□□□□ -2.23
NUP42P49686 YNL054W-BYNL054W-B 5250 nt1.11□□□□□ -2.23
NUP42P49686 YJR029WYJR029W 5268 nt1.09□□□□□ -2.24
NUP42P49686 FIG2YCR089W 4830 nt1.08□□□□□ -2.24
NUP42P49686 YBL100W-BYBL100W-B 5313 nt1.08□□□□□ -2.24
NUP42P49686 snR75snR75 89 nt1.07□□□□□ -2.24
NUP42P49686 BUD3YCL014W 4911 nt1.06□□□□□ -2.24
NUP42P49686 YOR186C-AYOR186C-A 210 nt1.04□□□□□ -2.24
NUP42P49686 YMR160WYMR160W 2451 nt1.03□□□□□ -2.24
NUP42P49686 YER078W-AYER078W-A 165 nt1□□□□□ -2.25
NUP42P49686 EMT1tM(CAU)D 73 nt1□□□□□ -2.25
NUP42P49686 EMT5tM(CAU)J1 73 nt1□□□□□ -2.25
NUP42P49686 EMT3tM(CAU)J2 73 nt1□□□□□ -2.25
NUP42P49686 EMT4tM(CAU)M 73 nt1□□□□□ -2.25
NUP42P49686 EMT2tM(CAU)O2 73 nt1□□□□□ -2.25
NUP42P49686 IQG1YPL242C 4488 nt0.99□□□□□ -2.25
NUP42P49686 YKL106C-AYKL106C-A 120 nt0.94□□□□□ -2.26
NUP42P49686 YPR159C-AYPR159C-A 102 nt0.94□□□□□ -2.26
NUP42P49686 YPR137C-BYPR137C-B 5268 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)E1tH(GUG)E1 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)E2tH(GUG)E2 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)G1tH(GUG)G1 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)G2tH(GUG)G2 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)HtH(GUG)H 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)KtH(GUG)K 72 nt0.9□□□□□ -2.27
NUP42P49686 tH(GUG)MtH(GUG)M 72 nt0.9□□□□□ -2.27
NUP42P49686 IML1YJR138W 4755 nt0.88□□□□□ -2.27
NUP42P49686 UTP20YBL004W 7482 nt0.83□□□□□ -2.28
NUP42P49686 tV(UAC)BtV(UAC)B 74 nt0.8□□□□□ -2.28
NUP42P49686 tV(UAC)DtV(UAC)D 74 nt0.8□□□□□ -2.28
NUP42P49686 YDL114W-AYDL114W-A 114 nt0.79□□□□□ -2.28
NUP42P49686 YML100W-AYML100W-A 174 nt0.79□□□□□ -2.28
NUP42P49686 UTP10YJL109C 5310 nt0.75□□□□□ -2.29
NUP42P49686 MYO1YHR023W 5787 nt0.71□□□□□ -2.3
NUP42P49686 YMR272W-AYMR272W-A 114 nt0.63□□□□□ -2.31
NUP42P49686 tV(UAC)QtV(UAC)Q 76 nt0.61□□□□□ -2.31
NUP42P49686 ESP1YGR098C 4893 nt0.6□□□□□ -2.31
NUP42P49686 SOV1YMR066W 2697 nt0.59□□□□□ -2.32
NUP42P49686 snR128snR128 126 nt0.56□□□□□ -2.32
NUP42P49686 YOR376W-AYOR376W-A 156 nt0.56□□□□□ -2.32
NUP42P49686 FMP27YLR454W 7887 nt0.56□□□□□ -2.32
NUP42P49686 YOR316C-AYOR316C-A 210 nt0.54□□□□□ -2.32
NUP42P49686 PAU9YBL108C-A 129 nt0.5□□□□□ -2.33
NUP42P49686 tT(AGU)BtT(AGU)B 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)CtT(AGU)C 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)DtT(AGU)D 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)HtT(AGU)H 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)I1tT(AGU)I1 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)I2tT(AGU)I2 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)JtT(AGU)J 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)N1tT(AGU)N1 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)N2tT(AGU)N2 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)O1tT(AGU)O1 73 nt0.48□□□□□ -2.33
NUP42P49686 tT(AGU)O2tT(AGU)O2 73 nt0.48□□□□□ -2.33
NUP42P49686 YOL013W-AYOL013W-A 192 nt0.48□□□□□ -2.33
NUP42P49686 tF(GAA)BtF(GAA)B 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)FtF(GAA)F 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)GtF(GAA)G 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)H1tF(GAA)H1 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)H2tF(GAA)H2 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)MtF(GAA)M 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)P1tF(GAA)P1 73 nt0.45□□□□□ -2.34
NUP42P49686 tF(GAA)P2tF(GAA)P2 73 nt0.45□□□□□ -2.34
NUP42P49686 SBH2YER019C-A 267 nt0.45□□□□□ -2.34
NUP42P49686 snR77snR77 88 nt0.41□□□□□ -2.34
NUP42P49686 YKL145W-AYKL145W-A 93 nt0.37□□□□□ -2.35
NUP42P49686 YOL014WYOL014W 375 nt0.33□□□□□ -2.36
NUP42P49686 THO2YNL139C 4794 nt0.33□□□□□ -2.36
Retrieved 100 of 7,029 protein–RNA pairs in 101.8 ms