Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CXCL12P48061 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 KRT8P17-201ENST00000453110 1448 ntBASIC19.94■□□□□ 0.78
CXCL12P48061 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
CXCL12P48061 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.94■□□□□ 0.78
CXCL12P48061 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.94■□□□□ 0.78
CXCL12P48061 FAM87A-204ENST00000613235 858 ntBASIC19.94■□□□□ 0.78
CXCL12P48061 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.94■□□□□ 0.78
CXCL12P48061 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CXCL12P48061 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
CXCL12P48061 GUSBP5-202ENST00000510805 1989 ntBASIC19.94■□□□□ 0.78
CXCL12P48061 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.93■□□□□ 0.78
CXCL12P48061 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.93■□□□□ 0.78
CXCL12P48061 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
CXCL12P48061 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC19.93■□□□□ 0.78
CXCL12P48061 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.93■□□□□ 0.78
CXCL12P48061 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CXCL12P48061 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC19.93■□□□□ 0.78
CXCL12P48061 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.93■□□□□ 0.78
CXCL12P48061 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
CXCL12P48061 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.93■□□□□ 0.78
CXCL12P48061 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 INGX-201ENST00000359239 846 ntBASIC19.92■□□□□ 0.78
CXCL12P48061 HMGA1P5-201ENST00000412453 271 ntBASIC19.92■□□□□ 0.78
CXCL12P48061 AC004980.1-204ENST00000429707 299 ntBASIC19.92■□□□□ 0.78
CXCL12P48061 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC19.92■□□□□ 0.78
CXCL12P48061 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.92■□□□□ 0.78
CXCL12P48061 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.92■□□□□ 0.78
CXCL12P48061 SLC25A1P4-201ENST00000567977 778 ntBASIC19.92■□□□□ 0.78
CXCL12P48061 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC19.92■□□□□ 0.78
CXCL12P48061 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.92■□□□□ 0.78
CXCL12P48061 AC121338.2-201ENST00000622535 1744 ntBASIC19.92■□□□□ 0.78
CXCL12P48061 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CXCL12P48061 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.92■□□□□ 0.78
CXCL12P48061 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CXCL12P48061 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CXCL12P48061 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.91■□□□□ 0.78
CXCL12P48061 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
CXCL12P48061 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.91■□□□□ 0.78
CXCL12P48061 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.91■□□□□ 0.78
CXCL12P48061 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 AC117947.1-201ENST00000427448 529 ntBASIC19.91■□□□□ 0.78
CXCL12P48061 METTL23-204ENST00000586752 904 ntTSL 2 BASIC19.91■□□□□ 0.78
CXCL12P48061 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.91■□□□□ 0.78
CXCL12P48061 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC19.91■□□□□ 0.78
CXCL12P48061 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CXCL12P48061 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.9■□□□□ 0.78
CXCL12P48061 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL12P48061 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL12P48061 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL12P48061 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL12P48061 FAM8A6P-201ENST00000407496 1135 ntBASIC19.9■□□□□ 0.78
CXCL12P48061 ISCU-203ENST00000431221 799 ntTSL 2 BASIC19.9■□□□□ 0.78
CXCL12P48061 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
CXCL12P48061 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.9■□□□□ 0.78
CXCL12P48061 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CXCL12P48061 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.9■□□□□ 0.78
CXCL12P48061 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
CXCL12P48061 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 RNF152P1-201ENST00000397754 604 ntBASIC19.89■□□□□ 0.77
CXCL12P48061 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.89■□□□□ 0.77
CXCL12P48061 SAPCD2P2-201ENST00000431719 1174 ntBASIC19.89■□□□□ 0.77
CXCL12P48061 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CXCL12P48061 AC091390.4-202ENST00000476426 537 ntBASIC19.89■□□□□ 0.77
CXCL12P48061 FDX2-206ENST00000492239 773 ntTSL 2 BASIC19.89■□□□□ 0.77
CXCL12P48061 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 AC139887.4-201ENST00000607877 719 ntBASIC19.89■□□□□ 0.77
CXCL12P48061 AC130371.2-201ENST00000619443 611 ntBASIC19.89■□□□□ 0.77
CXCL12P48061 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CXCL12P48061 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CXCL12P48061 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms