Protein–RNA interactions for Protein: P47017

LSM1, Sm-like protein LSm1, yeastyeast

Known RBP Predictions only

Length 172 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
LSM1P47017 YBR182C-AYBR182C-A 195 nt-1.91□□□□□ -2.72
LSM1P47017 tY(GUA)QtY(GUA)Q 84 nt-1.92□□□□□ -2.72
LSM1P47017 YLR286W-AYLR286W-A 135 nt-1.92□□□□□ -2.72
LSM1P47017 YML054C-AYML054C-A 159 nt-1.93□□□□□ -2.72
LSM1P47017 YOR008C-AYOR008C-A 225 nt-1.94□□□□□ -2.72
LSM1P47017 CDC65tQ(CUG)M 72 nt-1.96□□□□□ -2.72
LSM1P47017 YGR240C-AYGR240C-A 201 nt-2□□□□□ -2.73
LSM1P47017 YJR157WYJR157W 363 nt-2.01□□□□□ -2.73
LSM1P47017 YNL205CYNL205C 423 nt-2.01□□□□□ -2.73
LSM1P47017 YOR329W-AYOR329W-A 210 nt-2.01□□□□□ -2.73
LSM1P47017 YDL159C-BYDL159C-B 177 nt-2.02□□□□□ -2.73
LSM1P47017 YBR178WYBR178W 375 nt-2.02□□□□□ -2.73
LSM1P47017 snR77snR77 88 nt-2.04□□□□□ -2.74
LSM1P47017 tF(GAA)QtF(GAA)Q 75 nt-2.06□□□□□ -2.74
LSM1P47017 YBR131C-AYBR131C-A 90 nt-2.06□□□□□ -2.74
LSM1P47017 YAL016C-BYAL016C-B 186 nt-2.07□□□□□ -2.74
LSM1P47017 YER181CYER181C 324 nt-2.08□□□□□ -2.74
LSM1P47017 YPR197CYPR197C 564 nt-2.08□□□□□ -2.74
LSM1P47017 YPL038W-AYPL038W-A 192 nt-2.1□□□□□ -2.75
LSM1P47017 snR81snR81 201 nt-2.14□□□□□ -2.75
LSM1P47017 YDR413CYDR413C 576 nt-2.15□□□□□ -2.75
LSM1P47017 YMR315W-AYMR315W-A 108 nt-2.18□□□□□ -2.76
LSM1P47017 RPL39YJL189W 156 nt-2.2□□□□□ -2.76
LSM1P47017 YLR222C-AYLR222C-A 231 nt-2.25□□□□□ -2.77
LSM1P47017 YLR299C-AYLR299C-A 93 nt-2.25□□□□□ -2.77
LSM1P47017 YNL097C-BYNL097C-B 123 nt-2.26□□□□□ -2.77
LSM1P47017 YNL277W-AYNL277W-A 189 nt-2.27□□□□□ -2.77
LSM1P47017 snR55snR55 98 nt-2.28□□□□□ -2.77
LSM1P47017 YDR157WYDR157W 402 nt-2.28□□□□□ -2.77
LSM1P47017 snR48snR48 113 nt-2.3□□□□□ -2.78
LSM1P47017 YOR102WYOR102W 351 nt-2.31□□□□□ -2.78
LSM1P47017 YBR196C-AYBR196C-A 150 nt-2.31□□□□□ -2.78
LSM1P47017 YOR376W-AYOR376W-A 156 nt-2.33□□□□□ -2.78
LSM1P47017 YDL240C-AYDL240C-A 138 nt-2.35□□□□□ -2.79
LSM1P47017 YGL188C-AYGL188C-A 141 nt-2.36□□□□□ -2.79
LSM1P47017 YKL118WYKL118W 312 nt-2.37□□□□□ -2.79
LSM1P47017 tL(UAA)QtL(UAA)Q 85 nt-2.4□□□□□ -2.79
LSM1P47017 YBR126W-BYBR126W-B 144 nt-2.41□□□□□ -2.8
LSM1P47017 Q0017Q0017 162 nt-2.44□□□□□ -2.8
LSM1P47017 YOL155W-AYOL155W-A 135 nt-2.49□□□□□ -2.81
LSM1P47017 GIM4YEL003W 336 nt-2.5□□□□□ -2.81
LSM1P47017 YHR180C-BYHR180C-B 105 nt-2.5□□□□□ -2.81
LSM1P47017 YOR302WYOR302W 78 nt-2.5□□□□□ -2.81
LSM1P47017 YDR118W-AYDR118W-A 117 nt-2.51□□□□□ -2.81
LSM1P47017 YOR316C-AYOR316C-A 210 nt-2.53□□□□□ -2.81
LSM1P47017 YOR309CYOR309C 381 nt-2.56□□□□□ -2.82
LSM1P47017 YLR342W-AYLR342W-A 174 nt-2.58□□□□□ -2.82
LSM1P47017 snR52snR52 92 nt-2.59□□□□□ -2.82
LSM1P47017 YHL015W-AYHL015W-A 84 nt-2.61□□□□□ -2.83
LSM1P47017 YKL106C-AYKL106C-A 120 nt-2.63□□□□□ -2.83
LSM1P47017 YPR012WYPR012W 255 nt-2.67□□□□□ -2.84
LSM1P47017 YJL150WYJL150W 303 nt-2.7□□□□□ -2.84
LSM1P47017 YPL152W-AYPL152W-A 99 nt-2.7□□□□□ -2.84
LSM1P47017 VAR1Q0140 1197 nt-2.74□□□□□ -2.85
LSM1P47017 YNL198CYNL198C 303 nt-2.76□□□□□ -2.85
LSM1P47017 snR65snR65 100 nt-2.79□□□□□ -2.86
LSM1P47017 YBR109W-AYBR109W-A 225 nt-2.84□□□□□ -2.86
LSM1P47017 snR56snR56 88 nt-2.86□□□□□ -2.87
LSM1P47017 YDR524W-CYDR524W-C 90 nt-2.9□□□□□ -2.87
LSM1P47017 SOM1YEL059C-A 225 nt-2.91□□□□□ -2.88
LSM1P47017 YBR296C-AYBR296C-A 120 nt-2.91□□□□□ -2.88
LSM1P47017 RPL41AYDL184C 78 nt-2.94□□□□□ -2.88
LSM1P47017 snR6snR6 112 nt-3.02□□□□□ -2.89
LSM1P47017 YCR095W-AYCR095W-A 159 nt-3.04□□□□□ -2.9
LSM1P47017 snR80snR80 171 nt-3.04□□□□□ -2.9
LSM1P47017 YOL083C-AYOL083C-A 141 nt-3.05□□□□□ -2.9
LSM1P47017 snR38snR38 95 nt-3.07□□□□□ -2.9
LSM1P47017 YDR543CYDR543C 300 nt-3.09□□□□□ -2.9
LSM1P47017 YBL053WYBL053W 375 nt-3.13□□□□□ -2.91
LSM1P47017 YDR406W-AYDR406W-A 246 nt-3.15□□□□□ -2.91
LSM1P47017 YOR335W-AYOR335W-A 81 nt-3.2□□□□□ -2.92
LSM1P47017 YOR231C-AYOR231C-A 201 nt-3.21□□□□□ -2.92
LSM1P47017 snR73snR73 106 nt-3.23□□□□□ -2.93
LSM1P47017 YGR151CYGR151C 336 nt-3.23□□□□□ -2.93
LSM1P47017 YBL071C-BYBL071C-B 99 nt-3.24□□□□□ -2.93
LSM1P47017 RPL41BYDL133C-A 78 nt-3.25□□□□□ -2.93
LSM1P47017 YOL164W-AYOL164W-A 183 nt-3.27□□□□□ -2.93
LSM1P47017 YHR175W-AYHR175W-A 150 nt-3.33□□□□□ -2.94
LSM1P47017 snR47snR47 99 nt-3.37□□□□□ -2.95
LSM1P47017 YAL037C-AYAL037C-A 93 nt-3.45□□□□□ -2.96
LSM1P47017 tR(ACG)Q2tR(ACG)Q2 74 nt-3.47□□□□□ -2.96
LSM1P47017 YBL100W-CYBL100W-C 120 nt-3.49□□□□□ -2.97
LSM1P47017 tV(UAC)QtV(UAC)Q 76 nt-3.55□□□□□ -2.98
LSM1P47017 YDL114W-AYDL114W-A 114 nt-3.57□□□□□ -2.98
LSM1P47017 Q0144Q0144 330 nt-3.57□□□□□ -2.98
LSM1P47017 snR85snR85 171 nt-3.61□□□□□ -2.99
LSM1P47017 Q0142Q0142 177 nt-3.62□□□□□ -2.99
LSM1P47017 YOL166W-AYOL166W-A 156 nt-3.62□□□□□ -2.99
LSM1P47017 YDR524C-AYDR524C-A 120 nt-3.64□□□□□ -2.99
LSM1P47017 YKL225WYKL225W 348 nt-3.64□□□□□ -2.99
LSM1P47017 YCL001W-BYCL001W-B 255 nt-3.65□□□□□ -2.99
LSM1P47017 YMR046W-AYMR046W-A 129 nt-3.71□□□□□ -3
LSM1P47017 tS(GCU)Q1tS(GCU)Q1 86 nt-3.73□□□□□ -3.01
LSM1P47017 SPG3YDR504C 384 nt-3.76□□□□□ -3.01
LSM1P47017 YNL337WYNL337W 255 nt-3.91□□□□□ -3.04
LSM1P47017 YGR122C-AYGR122C-A 129 nt-4.06□□□□□ -3.06
LSM1P47017 snR87snR87 109 nt-4.08□□□□□ -3.06
LSM1P47017 YLR466C-BYLR466C-B 117 nt-4.08□□□□□ -3.06
LSM1P47017 YDL159W-AYDL159W-A 132 nt-4.1□□□□□ -3.07
LSM1P47017 YDR034C-AYDR034C-A 177 nt-4.12□□□□□ -3.07
Retrieved 100 of 7,029 protein–RNA pairs in 25.9 ms