Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 AC116351.2-201ENST00000606540 1585 ntBASIC20.13■□□□□ 0.81
TNFRSF4P43489 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TNFRSF4P43489 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TNFRSF4P43489 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 AP000525.1-201ENST00000608286 694 ntBASIC20.13■□□□□ 0.81
TNFRSF4P43489 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TNFRSF4P43489 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
TNFRSF4P43489 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
TNFRSF4P43489 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.13■□□□□ 0.81
TNFRSF4P43489 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 MIR1238-201ENST00000408483 83 ntBASIC20.12■□□□□ 0.81
TNFRSF4P43489 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 AL031985.4-201ENST00000642138 673 ntBASIC20.12■□□□□ 0.81
TNFRSF4P43489 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 TFP1-202ENST00000475455 1573 ntBASIC20.12■□□□□ 0.81
TNFRSF4P43489 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
TNFRSF4P43489 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
TNFRSF4P43489 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 AF106564.1-201ENST00000607058 2553 ntBASIC20.11■□□□□ 0.81
TNFRSF4P43489 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 FITM1-202ENST00000559294 800 ntBASIC20.11■□□□□ 0.81
TNFRSF4P43489 C1QL1P1-201ENST00000568105 661 ntBASIC20.11■□□□□ 0.81
TNFRSF4P43489 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MIR6786-201ENST00000616843 113 ntBASIC20.11■□□□□ 0.81
TNFRSF4P43489 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.11■□□□□ 0.81
TNFRSF4P43489 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFRSF4P43489 AC092720.2-201ENST00000602388 1665 ntBASIC20.1■□□□□ 0.81
TNFRSF4P43489 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
TNFRSF4P43489 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
TNFRSF4P43489 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFRSF4P43489 YBX1P10-201ENST00000444752 975 ntBASIC20.1■□□□□ 0.81
TNFRSF4P43489 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.1■□□□□ 0.81
TNFRSF4P43489 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.1■□□□□ 0.81
TNFRSF4P43489 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFRSF4P43489 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TNFRSF4P43489 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TNFRSF4P43489 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.1■□□□□ 0.81
TNFRSF4P43489 KRT8P9-201ENST00000558927 1449 ntBASIC20.1■□□□□ 0.81
TNFRSF4P43489 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.09■□□□□ 0.81
TNFRSF4P43489 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.09■□□□□ 0.81
TNFRSF4P43489 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFRSF4P43489 TMPOP1-202ENST00000424642 1267 ntBASIC20.09■□□□□ 0.81
TNFRSF4P43489 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.09■□□□□ 0.81
TNFRSF4P43489 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFRSF4P43489 AC005363.2-201ENST00000618631 242 ntBASIC20.09■□□□□ 0.81
TNFRSF4P43489 AL445675.2-201ENST00000620291 557 ntBASIC20.09■□□□□ 0.81
TNFRSF4P43489 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
TNFRSF4P43489 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
TNFRSF4P43489 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFRSF4P43489 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFRSF4P43489 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFRSF4P43489 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 AC018553.1-201ENST00000616682 1458 ntBASIC20.08■□□□□ 0.81
TNFRSF4P43489 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFRSF4P43489 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.08■□□□□ 0.81
TNFRSF4P43489 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TNFRSF4P43489 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 NAPSB-206ENST00000562112 1266 ntBASIC20.08■□□□□ 0.81
TNFRSF4P43489 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.08■□□□□ 0.81
TNFRSF4P43489 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.8
TNFRSF4P43489 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms