Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL355802.2-201ENST00000402069 882 ntBASIC19.32■□□□□ 0.68
HNF4AP41235 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.32■□□□□ 0.68
HNF4AP41235 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.32■□□□□ 0.68
HNF4AP41235 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.32■□□□□ 0.68
HNF4AP41235 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.32■□□□□ 0.68
HNF4AP41235 AL031963.3-201ENST00000606441 850 ntBASIC19.32■□□□□ 0.68
HNF4AP41235 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HNF4AP41235 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC19.31■□□□□ 0.68
HNF4AP41235 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
HNF4AP41235 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.31■□□□□ 0.68
HNF4AP41235 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.31■□□□□ 0.68
HNF4AP41235 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HNF4AP41235 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.31■□□□□ 0.68
HNF4AP41235 C2orf69P4-201ENST00000565394 541 ntBASIC19.31■□□□□ 0.68
HNF4AP41235 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.31■□□□□ 0.68
HNF4AP41235 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.31■□□□□ 0.68
HNF4AP41235 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC19.31■□□□□ 0.68
HNF4AP41235 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HNF4AP41235 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.3■□□□□ 0.68
HNF4AP41235 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HNF4AP41235 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HNF4AP41235 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HNF4AP41235 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.3■□□□□ 0.68
HNF4AP41235 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.3■□□□□ 0.68
HNF4AP41235 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.3■□□□□ 0.68
HNF4AP41235 AC098934.4-201ENST00000564127 592 ntBASIC19.3■□□□□ 0.68
HNF4AP41235 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.3■□□□□ 0.68
HNF4AP41235 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 KRT8P20-201ENST00000423953 1409 ntBASIC19.3■□□□□ 0.68
HNF4AP41235 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
HNF4AP41235 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HNF4AP41235 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.3■□□□□ 0.68
HNF4AP41235 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HNF4AP41235 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC19.29■□□□□ 0.68
HNF4AP41235 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HNF4AP41235 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
HNF4AP41235 AL691432.2-201ENST00000607222 2038 ntBASIC19.29■□□□□ 0.68
HNF4AP41235 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.29■□□□□ 0.68
HNF4AP41235 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HNF4AP41235 AC007952.6-201ENST00000573168 2673 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 AC003957.1-201ENST00000625108 2673 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 KRT16P6-202ENST00000425692 1426 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 HLA-G-202ENST00000376815 851 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 HLA-G-203ENST00000376818 1127 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 DUSP5P2-201ENST00000426873 1033 ntBASIC19.28■□□□□ 0.68
HNF4AP41235 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.28■□□□□ 0.68
HNF4AP41235 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
HNF4AP41235 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.28■□□□□ 0.68
HNF4AP41235 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.28■□□□□ 0.68
HNF4AP41235 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.28■□□□□ 0.68
HNF4AP41235 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HNF4AP41235 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms