Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YOL155W-AYOL155W-A 135 nt-0.59□□□□□ -2.5
CDC40P40968 YDL007C-AYDL007C-A 258 nt-0.6□□□□□ -2.51
CDC40P40968 tQ(UUG)QtQ(UUG)Q 76 nt-0.6□□□□□ -2.51
CDC40P40968 tT(UGU)G1tT(UGU)G1 72 nt-0.61□□□□□ -2.51
CDC40P40968 tT(UGU)G2tT(UGU)G2 72 nt-0.61□□□□□ -2.51
CDC40P40968 tT(UGU)PtT(UGU)P 72 nt-0.61□□□□□ -2.51
CDC40P40968 snR161snR161 161 nt-0.64□□□□□ -2.51
CDC40P40968 PAU9YBL108C-A 129 nt-0.65□□□□□ -2.51
CDC40P40968 YPL152W-AYPL152W-A 99 nt-0.65□□□□□ -2.51
CDC40P40968 YOR170WYOR170W 306 nt-0.66□□□□□ -2.52
CDC40P40968 tA(UGC)QtA(UGC)Q 76 nt-0.67□□□□□ -2.52
CDC40P40968 YML100W-AYML100W-A 174 nt-0.67□□□□□ -2.52
CDC40P40968 snR33snR33 183 nt-0.67□□□□□ -2.52
CDC40P40968 snR39BsnR39B 96 nt-0.68□□□□□ -2.52
CDC40P40968 snR69snR69 101 nt-0.69□□□□□ -2.52
CDC40P40968 YDR524W-CYDR524W-C 90 nt-0.69□□□□□ -2.52
CDC40P40968 YNL097C-BYNL097C-B 123 nt-0.73□□□□□ -2.53
CDC40P40968 YGL188C-AYGL188C-A 141 nt-0.74□□□□□ -2.53
CDC40P40968 YOR302WYOR302W 78 nt-0.74□□□□□ -2.53
CDC40P40968 YGR146C-AYGR146C-A 162 nt-0.75□□□□□ -2.53
CDC40P40968 YOR329W-AYOR329W-A 210 nt-0.75□□□□□ -2.53
CDC40P40968 YNR077CYNR077C 255 nt-0.79□□□□□ -2.54
CDC40P40968 RDS3YPR094W 324 nt-0.79□□□□□ -2.54
CDC40P40968 YHL009W-BYHL009W-B 5409 nt-0.79□□□□□ -2.54
CDC40P40968 PMP2YEL017C-A 132 nt-0.81□□□□□ -2.54
CDC40P40968 YOR231C-AYOR231C-A 201 nt-0.82□□□□□ -2.54
CDC40P40968 snR52snR52 92 nt-0.82□□□□□ -2.54
CDC40P40968 YER090C-AYER090C-A 90 nt-0.84□□□□□ -2.54
CDC40P40968 YBR223W-AYBR223W-A 120 nt-0.85□□□□□ -2.55
CDC40P40968 snR50snR50 90 nt-0.85□□□□□ -2.55
CDC40P40968 YLR342W-AYLR342W-A 174 nt-0.87□□□□□ -2.55
CDC40P40968 YNL266WYNL266W 420 nt-0.89□□□□□ -2.55
CDC40P40968 snR80snR80 171 nt-0.92□□□□□ -2.56
CDC40P40968 tD(GUC)QtD(GUC)Q 75 nt-0.95□□□□□ -2.56
CDC40P40968 snR48snR48 113 nt-0.96□□□□□ -2.56
CDC40P40968 JLP2YMR132C 627 nt-0.97□□□□□ -2.56
CDC40P40968 YNL205CYNL205C 423 nt-0.97□□□□□ -2.56
CDC40P40968 YBR178WYBR178W 375 nt-0.99□□□□□ -2.57
CDC40P40968 tP(UGG)QtP(UGG)Q 72 nt-1□□□□□ -2.57
CDC40P40968 YHL015W-AYHL015W-A 84 nt-1□□□□□ -2.57
CDC40P40968 YLR286W-AYLR286W-A 135 nt-1□□□□□ -2.57
CDC40P40968 YOR102WYOR102W 351 nt-1.01□□□□□ -2.57
CDC40P40968 tL(UAA)QtL(UAA)Q 85 nt-1.02□□□□□ -2.57
CDC40P40968 snR67snR67 82 nt-1.04□□□□□ -2.58
CDC40P40968 YDL159C-BYDL159C-B 177 nt-1.06□□□□□ -2.58
CDC40P40968 YDR406W-AYDR406W-A 246 nt-1.09□□□□□ -2.58
CDC40P40968 SKI7YOR076C 2244 nt-1.13□□□□□ -2.59
CDC40P40968 YBR196C-AYBR196C-A 150 nt-1.22□□□□□ -2.6
CDC40P40968 YLR299C-AYLR299C-A 93 nt-1.23□□□□□ -2.61
CDC40P40968 YNL198CYNL198C 303 nt-1.27□□□□□ -2.61
CDC40P40968 tY(GUA)QtY(GUA)Q 84 nt-1.28□□□□□ -2.61
CDC40P40968 Q0142Q0142 177 nt-1.29□□□□□ -2.62
CDC40P40968 CDC65tQ(CUG)M 72 nt-1.29□□□□□ -2.62
CDC40P40968 YML054C-AYML054C-A 159 nt-1.31□□□□□ -2.62
CDC40P40968 snR77snR77 88 nt-1.34□□□□□ -2.62
CDC40P40968 YJL150WYJL150W 303 nt-1.35□□□□□ -2.63
CDC40P40968 YGR240C-AYGR240C-A 201 nt-1.37□□□□□ -2.63
CDC40P40968 SOM1YEL059C-A 225 nt-1.4□□□□□ -2.63
CDC40P40968 YBL053WYBL053W 375 nt-1.4□□□□□ -2.63
CDC40P40968 YMR046W-AYMR046W-A 129 nt-1.42□□□□□ -2.64
CDC40P40968 snR81snR81 201 nt-1.44□□□□□ -2.64
CDC40P40968 YMR315W-AYMR315W-A 108 nt-1.45□□□□□ -2.64
CDC40P40968 YHR180C-BYHR180C-B 105 nt-1.5□□□□□ -2.65
CDC40P40968 SPG3YDR504C 384 nt-1.52□□□□□ -2.65
CDC40P40968 YCR095W-AYCR095W-A 159 nt-1.53□□□□□ -2.65
CDC40P40968 YOR376W-AYOR376W-A 156 nt-1.55□□□□□ -2.66
CDC40P40968 tM(CAU)Q1tM(CAU)Q1 76 nt-1.67□□□□□ -2.68
CDC40P40968 YOR309CYOR309C 381 nt-1.67□□□□□ -2.68
CDC40P40968 YOR316C-AYOR316C-A 210 nt-1.74□□□□□ -2.69
CDC40P40968 YBR126W-BYBR126W-B 144 nt-1.74□□□□□ -2.69
CDC40P40968 YGR151CYGR151C 336 nt-1.78□□□□□ -2.69
CDC40P40968 YLR466C-BYLR466C-B 117 nt-1.78□□□□□ -2.69
CDC40P40968 YKL106C-AYKL106C-A 120 nt-1.8□□□□□ -2.7
CDC40P40968 YOL083C-AYOL083C-A 141 nt-1.82□□□□□ -2.7
CDC40P40968 RPL41AYDL184C 78 nt-1.84□□□□□ -2.7
CDC40P40968 YCL001W-BYCL001W-B 255 nt-1.85□□□□□ -2.71
CDC40P40968 YBR296C-AYBR296C-A 120 nt-1.86□□□□□ -2.71
CDC40P40968 YNL338WYNL338W 159 nt-1.88□□□□□ -2.71
CDC40P40968 YOL166W-AYOL166W-A 156 nt-1.89□□□□□ -2.71
CDC40P40968 YBR109W-AYBR109W-A 225 nt-1.9□□□□□ -2.71
CDC40P40968 YDR543CYDR543C 300 nt-1.92□□□□□ -2.72
CDC40P40968 YBL071C-BYBL071C-B 99 nt-1.93□□□□□ -2.72
CDC40P40968 YOL164W-AYOL164W-A 183 nt-1.99□□□□□ -2.73
CDC40P40968 snR6snR6 112 nt-2□□□□□ -2.73
CDC40P40968 YAL037C-AYAL037C-A 93 nt-2.04□□□□□ -2.74
CDC40P40968 snR38snR38 95 nt-2.04□□□□□ -2.74
CDC40P40968 YBL100W-CYBL100W-C 120 nt-2.06□□□□□ -2.74
CDC40P40968 snR47snR47 99 nt-2.06□□□□□ -2.74
CDC40P40968 YOR335W-AYOR335W-A 81 nt-2.1□□□□□ -2.75
CDC40P40968 snR73snR73 106 nt-2.13□□□□□ -2.75
CDC40P40968 YNL337WYNL337W 255 nt-2.17□□□□□ -2.76
CDC40P40968 RPL41BYDL133C-A 78 nt-2.23□□□□□ -2.77
CDC40P40968 Q0032Q0032 291 nt-2.32□□□□□ -2.78
CDC40P40968 tS(GCU)Q1tS(GCU)Q1 86 nt-2.38□□□□□ -2.79
CDC40P40968 tV(UAC)QtV(UAC)Q 76 nt-2.39□□□□□ -2.79
CDC40P40968 YKL225WYKL225W 348 nt-2.41□□□□□ -2.8
CDC40P40968 YDL114W-AYDL114W-A 114 nt-2.43□□□□□ -2.8
CDC40P40968 YDR524C-AYDR524C-A 120 nt-2.45□□□□□ -2.8
CDC40P40968 YGL007C-AYGL007C-A 87 nt-2.45□□□□□ -2.8
CDC40P40968 YGL041C-BYGL041C-B 183 nt-2.46□□□□□ -2.8
Retrieved 100 of 7,029 protein–RNA pairs in 59.7 ms