Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC23.78■■□□□ 1.4
SCN4AP35499 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.78■■□□□ 1.4
SCN4AP35499 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC23.78■■□□□ 1.4
SCN4AP35499 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC23.78■■□□□ 1.4
SCN4AP35499 HLA-G-202ENST00000376815 851 ntBASIC23.78■■□□□ 1.4
SCN4AP35499 HLA-G-203ENST00000376818 1127 ntBASIC23.78■■□□□ 1.4
SCN4AP35499 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC23.78■■□□□ 1.4
SCN4AP35499 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC23.78■■□□□ 1.4
SCN4AP35499 KRT8P20-201ENST00000423953 1409 ntBASIC23.78■■□□□ 1.4
SCN4AP35499 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC23.78■■□□□ 1.4
SCN4AP35499 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN4AP35499 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SCN4AP35499 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SCN4AP35499 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SCN4AP35499 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SCN4AP35499 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SCN4AP35499 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
SCN4AP35499 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC23.77■■□□□ 1.4
SCN4AP35499 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.4
SCN4AP35499 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 AP006587.1-201ENST00000534129 1502 ntBASIC23.77■■□□□ 1.4
SCN4AP35499 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SCN4AP35499 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
SCN4AP35499 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 AC246785.2-201ENST00000432512 513 ntBASIC23.76■■□□□ 1.39
SCN4AP35499 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.76■■□□□ 1.39
SCN4AP35499 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
SCN4AP35499 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.76■■□□□ 1.39
SCN4AP35499 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.76■■□□□ 1.39
SCN4AP35499 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SCN4AP35499 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC23.75■■□□□ 1.39
SCN4AP35499 SLC25A1P2-201ENST00000430693 912 ntBASIC23.75■■□□□ 1.39
SCN4AP35499 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.75■■□□□ 1.39
SCN4AP35499 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
SCN4AP35499 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
SCN4AP35499 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC23.75■■□□□ 1.39
SCN4AP35499 TSPY21P-201ENST00000433481 731 ntBASIC23.75■■□□□ 1.39
SCN4AP35499 TSPY23P-201ENST00000440136 739 ntBASIC23.75■■□□□ 1.39
SCN4AP35499 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC23.75■■□□□ 1.39
SCN4AP35499 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC23.75■■□□□ 1.39
SCN4AP35499 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC23.75■■□□□ 1.39
SCN4AP35499 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC23.75■■□□□ 1.39
SCN4AP35499 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SCN4AP35499 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SCN4AP35499 STAC-204ENST00000457375 1366 ntTSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SCN4AP35499 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 AC011298.2-201ENST00000617989 482 ntBASIC23.74■■□□□ 1.39
SCN4AP35499 AC023511.2-201ENST00000618803 211 ntBASIC23.74■■□□□ 1.39
SCN4AP35499 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
SCN4AP35499 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
SCN4AP35499 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC23.74■■□□□ 1.39
SCN4AP35499 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SCN4AP35499 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
SCN4AP35499 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.73■■□□□ 1.39
SCN4AP35499 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.73■■□□□ 1.39
SCN4AP35499 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
SCN4AP35499 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
SCN4AP35499 TSPY17P-201ENST00000450329 467 ntBASIC23.73■■□□□ 1.39
SCN4AP35499 AL441883.1-201ENST00000566170 1045 ntBASIC23.73■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms