Protein–RNA interactions for Protein: P23643

VPS3, Vacuolar protein sorting-associated protein 3, yeastyeast

Predictions only

Length 1,011 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
VPS3P23643 snR33snR33 183 nt-0.72□□□□□ -2.52
VPS3P23643 YOR170WYOR170W 306 nt-0.73□□□□□ -2.53
VPS3P23643 YNR077CYNR077C 255 nt-0.74□□□□□ -2.53
VPS3P23643 snR49snR49 165 nt-0.74□□□□□ -2.53
VPS3P23643 snR69snR69 101 nt-0.75□□□□□ -2.53
VPS3P23643 YHR175W-AYHR175W-A 150 nt-0.76□□□□□ -2.53
VPS3P23643 YNL097C-BYNL097C-B 123 nt-0.76□□□□□ -2.53
VPS3P23643 tM(CAU)Q2tM(CAU)Q2 78 nt-0.77□□□□□ -2.53
VPS3P23643 tQ(UUG)QtQ(UUG)Q 76 nt-0.78□□□□□ -2.53
VPS3P23643 snR65snR65 100 nt-0.8□□□□□ -2.54
VPS3P23643 PAU9YBL108C-A 129 nt-0.8□□□□□ -2.54
VPS3P23643 YPL152W-AYPL152W-A 99 nt-0.82□□□□□ -2.54
VPS3P23643 YGR146C-AYGR146C-A 162 nt-0.84□□□□□ -2.54
VPS3P23643 tR(ACG)Q2tR(ACG)Q2 74 nt-0.84□□□□□ -2.54
VPS3P23643 YOL155W-AYOL155W-A 135 nt-0.84□□□□□ -2.54
VPS3P23643 snR56snR56 88 nt-0.85□□□□□ -2.55
VPS3P23643 snR39BsnR39B 96 nt-0.86□□□□□ -2.55
VPS3P23643 PMP2YEL017C-A 132 nt-0.88□□□□□ -2.55
VPS3P23643 YER090C-AYER090C-A 90 nt-0.88□□□□□ -2.55
VPS3P23643 YOR302WYOR302W 78 nt-0.88□□□□□ -2.55
VPS3P23643 RDS3YPR094W 324 nt-0.88□□□□□ -2.55
VPS3P23643 YOR329W-AYOR329W-A 210 nt-0.89□□□□□ -2.55
VPS3P23643 YHL009W-BYHL009W-B 5409 nt-0.89□□□□□ -2.55
VPS3P23643 YNL266WYNL266W 420 nt-0.9□□□□□ -2.55
VPS3P23643 snR161snR161 161 nt-0.9□□□□□ -2.55
VPS3P23643 snR50snR50 90 nt-0.92□□□□□ -2.56
VPS3P23643 YBR223W-AYBR223W-A 120 nt-0.99□□□□□ -2.57
VPS3P23643 YGL188C-AYGL188C-A 141 nt-1.01□□□□□ -2.57
VPS3P23643 JLP2YMR132C 627 nt-1.01□□□□□ -2.57
VPS3P23643 snR48snR48 113 nt-1.02□□□□□ -2.57
VPS3P23643 YOR231C-AYOR231C-A 201 nt-1.03□□□□□ -2.57
VPS3P23643 tD(GUC)QtD(GUC)Q 75 nt-1.05□□□□□ -2.58
VPS3P23643 tP(UGG)QtP(UGG)Q 72 nt-1.06□□□□□ -2.58
VPS3P23643 YDR524W-CYDR524W-C 90 nt-1.08□□□□□ -2.58
VPS3P23643 YNL205CYNL205C 423 nt-1.09□□□□□ -2.58
VPS3P23643 snR67snR67 82 nt-1.1□□□□□ -2.59
VPS3P23643 tL(UAA)QtL(UAA)Q 85 nt-1.1□□□□□ -2.59
VPS3P23643 YLR286W-AYLR286W-A 135 nt-1.1□□□□□ -2.59
VPS3P23643 YBR178WYBR178W 375 nt-1.1□□□□□ -2.59
VPS3P23643 snR52snR52 92 nt-1.1□□□□□ -2.59
VPS3P23643 snR80snR80 171 nt-1.11□□□□□ -2.59
VPS3P23643 YLR342W-AYLR342W-A 174 nt-1.14□□□□□ -2.59
VPS3P23643 YDL159C-BYDL159C-B 177 nt-1.17□□□□□ -2.6
VPS3P23643 SKI7YOR076C 2244 nt-1.19□□□□□ -2.6
VPS3P23643 YOR102WYOR102W 351 nt-1.19□□□□□ -2.6
VPS3P23643 YHL015W-AYHL015W-A 84 nt-1.22□□□□□ -2.6
VPS3P23643 YLR299C-AYLR299C-A 93 nt-1.33□□□□□ -2.62
VPS3P23643 YBR196C-AYBR196C-A 150 nt-1.34□□□□□ -2.62
VPS3P23643 tY(GUA)QtY(GUA)Q 84 nt-1.36□□□□□ -2.63
VPS3P23643 YDR406W-AYDR406W-A 246 nt-1.39□□□□□ -2.63
VPS3P23643 YML054C-AYML054C-A 159 nt-1.42□□□□□ -2.64
VPS3P23643 YNL198CYNL198C 303 nt-1.43□□□□□ -2.64
VPS3P23643 YJL150WYJL150W 303 nt-1.49□□□□□ -2.65
VPS3P23643 CDC65tQ(CUG)M 72 nt-1.5□□□□□ -2.65
VPS3P23643 YBL053WYBL053W 375 nt-1.51□□□□□ -2.65
VPS3P23643 snR77snR77 88 nt-1.54□□□□□ -2.66
VPS3P23643 SOM1YEL059C-A 225 nt-1.57□□□□□ -2.66
VPS3P23643 snR81snR81 201 nt-1.59□□□□□ -2.66
VPS3P23643 YGR240C-AYGR240C-A 201 nt-1.62□□□□□ -2.67
VPS3P23643 YHR180C-BYHR180C-B 105 nt-1.63□□□□□ -2.67
VPS3P23643 YMR315W-AYMR315W-A 108 nt-1.64□□□□□ -2.67
VPS3P23643 Q0142Q0142 177 nt-1.67□□□□□ -2.68
VPS3P23643 YMR046W-AYMR046W-A 129 nt-1.67□□□□□ -2.68
VPS3P23643 YOR376W-AYOR376W-A 156 nt-1.67□□□□□ -2.68
VPS3P23643 YCR095W-AYCR095W-A 159 nt-1.68□□□□□ -2.68
VPS3P23643 SPG3YDR504C 384 nt-1.77□□□□□ -2.69
VPS3P23643 YBR126W-BYBR126W-B 144 nt-1.83□□□□□ -2.7
VPS3P23643 YKL106C-AYKL106C-A 120 nt-1.86□□□□□ -2.71
VPS3P23643 YOR309CYOR309C 381 nt-1.86□□□□□ -2.71
VPS3P23643 YOR316C-AYOR316C-A 210 nt-1.87□□□□□ -2.71
VPS3P23643 YGR151CYGR151C 336 nt-1.91□□□□□ -2.72
VPS3P23643 YBR109W-AYBR109W-A 225 nt-1.91□□□□□ -2.72
VPS3P23643 tM(CAU)Q1tM(CAU)Q1 76 nt-1.92□□□□□ -2.72
VPS3P23643 YBR296C-AYBR296C-A 120 nt-1.92□□□□□ -2.72
VPS3P23643 RPL41AYDL184C 78 nt-1.95□□□□□ -2.72
VPS3P23643 YOL083C-AYOL083C-A 141 nt-1.95□□□□□ -2.72
VPS3P23643 YBL071C-BYBL071C-B 99 nt-1.97□□□□□ -2.72
VPS3P23643 YCL001W-BYCL001W-B 255 nt-2.01□□□□□ -2.73
VPS3P23643 YLR466C-BYLR466C-B 117 nt-2.02□□□□□ -2.73
VPS3P23643 snR38snR38 95 nt-2.02□□□□□ -2.73
VPS3P23643 YOL164W-AYOL164W-A 183 nt-2.07□□□□□ -2.74
VPS3P23643 YAL037C-AYAL037C-A 93 nt-2.09□□□□□ -2.74
VPS3P23643 YOL166W-AYOL166W-A 156 nt-2.12□□□□□ -2.75
VPS3P23643 YNL338WYNL338W 159 nt-2.15□□□□□ -2.75
VPS3P23643 snR47snR47 99 nt-2.18□□□□□ -2.76
VPS3P23643 YBL100W-CYBL100W-C 120 nt-2.23□□□□□ -2.77
VPS3P23643 YDR543CYDR543C 300 nt-2.26□□□□□ -2.77
VPS3P23643 YNL337WYNL337W 255 nt-2.29□□□□□ -2.78
VPS3P23643 snR6snR6 112 nt-2.34□□□□□ -2.78
VPS3P23643 tS(GCU)Q1tS(GCU)Q1 86 nt-2.44□□□□□ -2.8
VPS3P23643 YKL225WYKL225W 348 nt-2.45□□□□□ -2.8
VPS3P23643 YOR335W-AYOR335W-A 81 nt-2.46□□□□□ -2.8
VPS3P23643 snR73snR73 106 nt-2.47□□□□□ -2.8
VPS3P23643 Q0032Q0032 291 nt-2.51□□□□□ -2.81
VPS3P23643 YGL041C-BYGL041C-B 183 nt-2.59□□□□□ -2.82
VPS3P23643 RPL41BYDL133C-A 78 nt-2.6□□□□□ -2.83
VPS3P23643 YDL114W-AYDL114W-A 114 nt-2.61□□□□□ -2.83
VPS3P23643 YGL007C-AYGL007C-A 87 nt-2.62□□□□□ -2.83
VPS3P23643 tV(UAC)QtV(UAC)Q 76 nt-2.62□□□□□ -2.83
VPS3P23643 snR61snR61 90 nt-2.68□□□□□ -2.84
Retrieved 100 of 7,029 protein–RNA pairs in 14.2 ms