Protein–RNA interactions for Protein: P0C2J7

TY4B-H, Transposon Ty4-H Gag-Pol polyprotein, yeastyeast

Predictions only

Length 1,802 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
TY4B-HP0C2J7 YAL063C-AYAL063C-A 291 nt-1.68□□□□□ -2.68
TY4B-HP0C2J7 YOR381W-AYOR381W-A 168 nt-1.68□□□□□ -2.68
TY4B-HP0C2J7 YGL041CYGL041C 204 nt-1.68□□□□□ -2.68
TY4B-HP0C2J7 YAL016C-BYAL016C-B 186 nt-1.68□□□□□ -2.68
TY4B-HP0C2J7 YOR329W-AYOR329W-A 210 nt-1.68□□□□□ -2.68
TY4B-HP0C2J7 YOR008C-AYOR008C-A 225 nt-1.69□□□□□ -2.68
TY4B-HP0C2J7 YAL068W-AYAL068W-A 255 nt-1.7□□□□□ -2.68
TY4B-HP0C2J7 YBR196C-AYBR196C-A 150 nt-1.71□□□□□ -2.68
TY4B-HP0C2J7 ATP19YOL077W-A 207 nt-1.72□□□□□ -2.68
TY4B-HP0C2J7 snR78snR78 87 nt-1.73□□□□□ -2.69
TY4B-HP0C2J7 YDR183C-AYDR183C-A 258 nt-1.74□□□□□ -2.69
TY4B-HP0C2J7 YOR293C-AYOR293C-A 150 nt-1.74□□□□□ -2.69
TY4B-HP0C2J7 YDL159C-BYDL159C-B 177 nt-1.75□□□□□ -2.69
TY4B-HP0C2J7 YLR286W-AYLR286W-A 135 nt-1.75□□□□□ -2.69
TY4B-HP0C2J7 YJR157WYJR157W 363 nt-1.76□□□□□ -2.69
TY4B-HP0C2J7 YBR178WYBR178W 375 nt-1.77□□□□□ -2.69
TY4B-HP0C2J7 YER181CYER181C 324 nt-1.82□□□□□ -2.7
TY4B-HP0C2J7 YDR413CYDR413C 576 nt-1.82□□□□□ -2.7
TY4B-HP0C2J7 YOR376W-AYOR376W-A 156 nt-1.85□□□□□ -2.71
TY4B-HP0C2J7 YBR131C-AYBR131C-A 90 nt-1.86□□□□□ -2.71
TY4B-HP0C2J7 YPR197CYPR197C 564 nt-1.87□□□□□ -2.71
TY4B-HP0C2J7 YBR126W-BYBR126W-B 144 nt-1.87□□□□□ -2.71
TY4B-HP0C2J7 YMR315W-AYMR315W-A 108 nt-1.87□□□□□ -2.71
TY4B-HP0C2J7 YLR342W-AYLR342W-A 174 nt-1.89□□□□□ -2.71
TY4B-HP0C2J7 YLR299C-AYLR299C-A 93 nt-1.89□□□□□ -2.71
TY4B-HP0C2J7 tF(GAA)QtF(GAA)Q 75 nt-1.9□□□□□ -2.71
TY4B-HP0C2J7 YEL050W-AYEL050W-A 192 nt-1.91□□□□□ -2.72
TY4B-HP0C2J7 YHR180C-BYHR180C-B 105 nt-1.94□□□□□ -2.72
TY4B-HP0C2J7 YPL038W-AYPL038W-A 192 nt-1.94□□□□□ -2.72
TY4B-HP0C2J7 YDR543CYDR543C 300 nt-1.94□□□□□ -2.72
TY4B-HP0C2J7 Q0142Q0142 177 nt-1.96□□□□□ -2.72
TY4B-HP0C2J7 YKL118WYKL118W 312 nt-1.96□□□□□ -2.72
TY4B-HP0C2J7 YOR309CYOR309C 381 nt-1.98□□□□□ -2.73
TY4B-HP0C2J7 YOR316C-AYOR316C-A 210 nt-1.98□□□□□ -2.73
TY4B-HP0C2J7 YLR222C-AYLR222C-A 231 nt-2.01□□□□□ -2.73
TY4B-HP0C2J7 snR55snR55 98 nt-2.02□□□□□ -2.73
TY4B-HP0C2J7 YOR102WYOR102W 351 nt-2.03□□□□□ -2.73
TY4B-HP0C2J7 YNL097C-BYNL097C-B 123 nt-2.03□□□□□ -2.73
TY4B-HP0C2J7 RPL39YJL189W 156 nt-2.09□□□□□ -2.74
TY4B-HP0C2J7 snR48snR48 113 nt-2.1□□□□□ -2.74
TY4B-HP0C2J7 YDR157WYDR157W 402 nt-2.1□□□□□ -2.75
TY4B-HP0C2J7 tL(UAA)QtL(UAA)Q 85 nt-2.12□□□□□ -2.75
TY4B-HP0C2J7 YGL188C-AYGL188C-A 141 nt-2.15□□□□□ -2.75
TY4B-HP0C2J7 YOR302WYOR302W 78 nt-2.15□□□□□ -2.75
TY4B-HP0C2J7 YDL240C-AYDL240C-A 138 nt-2.16□□□□□ -2.76
TY4B-HP0C2J7 YNL277W-AYNL277W-A 189 nt-2.17□□□□□ -2.76
TY4B-HP0C2J7 YJL150WYJL150W 303 nt-2.19□□□□□ -2.76
TY4B-HP0C2J7 YNL198CYNL198C 303 nt-2.21□□□□□ -2.76
TY4B-HP0C2J7 YPR012WYPR012W 255 nt-2.24□□□□□ -2.77
TY4B-HP0C2J7 YKL106C-AYKL106C-A 120 nt-2.26□□□□□ -2.77
TY4B-HP0C2J7 RPL41AYDL184C 78 nt-2.27□□□□□ -2.77
TY4B-HP0C2J7 GIM4YEL003W 336 nt-2.3□□□□□ -2.78
TY4B-HP0C2J7 YDR524W-CYDR524W-C 90 nt-2.33□□□□□ -2.78
TY4B-HP0C2J7 YHL015W-AYHL015W-A 84 nt-2.33□□□□□ -2.78
TY4B-HP0C2J7 snR52snR52 92 nt-2.33□□□□□ -2.78
TY4B-HP0C2J7 YOL083C-AYOL083C-A 141 nt-2.33□□□□□ -2.78
TY4B-HP0C2J7 YOL155W-AYOL155W-A 135 nt-2.35□□□□□ -2.79
TY4B-HP0C2J7 Q0017Q0017 162 nt-2.35□□□□□ -2.79
TY4B-HP0C2J7 YBR296C-AYBR296C-A 120 nt-2.37□□□□□ -2.79
TY4B-HP0C2J7 snR80snR80 171 nt-2.38□□□□□ -2.79
TY4B-HP0C2J7 snR38snR38 95 nt-2.38□□□□□ -2.79
TY4B-HP0C2J7 YDR118W-AYDR118W-A 117 nt-2.38□□□□□ -2.79
TY4B-HP0C2J7 YBR109W-AYBR109W-A 225 nt-2.4□□□□□ -2.79
TY4B-HP0C2J7 snR56snR56 88 nt-2.41□□□□□ -2.8
TY4B-HP0C2J7 snR6snR6 112 nt-2.46□□□□□ -2.8
TY4B-HP0C2J7 SOM1YEL059C-A 225 nt-2.47□□□□□ -2.81
TY4B-HP0C2J7 YPL152W-AYPL152W-A 99 nt-2.49□□□□□ -2.81
TY4B-HP0C2J7 YCR095W-AYCR095W-A 159 nt-2.54□□□□□ -2.82
TY4B-HP0C2J7 snR65snR65 100 nt-2.54□□□□□ -2.82
TY4B-HP0C2J7 YOR335W-AYOR335W-A 81 nt-2.54□□□□□ -2.82
TY4B-HP0C2J7 VAR1Q0140 1197 nt-2.58□□□□□ -2.82
TY4B-HP0C2J7 YBL071C-BYBL071C-B 99 nt-2.6□□□□□ -2.83
TY4B-HP0C2J7 snR73snR73 106 nt-2.61□□□□□ -2.83
TY4B-HP0C2J7 YGR151CYGR151C 336 nt-2.61□□□□□ -2.83
TY4B-HP0C2J7 YBL053WYBL053W 375 nt-2.64□□□□□ -2.83
TY4B-HP0C2J7 YDR406W-AYDR406W-A 246 nt-2.65□□□□□ -2.83
TY4B-HP0C2J7 RPL41BYDL133C-A 78 nt-2.66□□□□□ -2.84
TY4B-HP0C2J7 snR47snR47 99 nt-2.68□□□□□ -2.84
TY4B-HP0C2J7 YOL164W-AYOL164W-A 183 nt-2.7□□□□□ -2.84
TY4B-HP0C2J7 tV(UAC)QtV(UAC)Q 76 nt-2.76□□□□□ -2.85
TY4B-HP0C2J7 YDR524C-AYDR524C-A 120 nt-2.78□□□□□ -2.85
TY4B-HP0C2J7 YDL114W-AYDL114W-A 114 nt-2.8□□□□□ -2.86
TY4B-HP0C2J7 YJR162CYJR162C 351 nt-2.8□□□□□ -2.86
TY4B-HP0C2J7 YNL337WYNL337W 255 nt-2.8□□□□□ -2.86
TY4B-HP0C2J7 YAL037C-AYAL037C-A 93 nt-2.86□□□□□ -2.87
TY4B-HP0C2J7 snR85snR85 171 nt-2.91□□□□□ -2.87
TY4B-HP0C2J7 YOR231C-AYOR231C-A 201 nt-2.93□□□□□ -2.88
TY4B-HP0C2J7 tS(GCU)Q1tS(GCU)Q1 86 nt-2.95□□□□□ -2.88
TY4B-HP0C2J7 YKL225WYKL225W 348 nt-2.96□□□□□ -2.88
TY4B-HP0C2J7 YBL100W-CYBL100W-C 120 nt-2.98□□□□□ -2.89
TY4B-HP0C2J7 SPG3YDR504C 384 nt-3.1□□□□□ -2.91
TY4B-HP0C2J7 YHR175W-AYHR175W-A 150 nt-3.1□□□□□ -2.91
TY4B-HP0C2J7 YGR122C-AYGR122C-A 129 nt-3.17□□□□□ -2.92
TY4B-HP0C2J7 snR87snR87 109 nt-3.18□□□□□ -2.92
TY4B-HP0C2J7 YMR046W-AYMR046W-A 129 nt-3.18□□□□□ -2.92
TY4B-HP0C2J7 YCL001W-BYCL001W-B 255 nt-3.22□□□□□ -2.93
TY4B-HP0C2J7 YDL159W-AYDL159W-A 132 nt-3.23□□□□□ -2.93
TY4B-HP0C2J7 snR58snR58 96 nt-3.28□□□□□ -2.94
TY4B-HP0C2J7 tR(ACG)Q2tR(ACG)Q2 74 nt-3.32□□□□□ -2.94
TY4B-HP0C2J7 YDR034C-AYDR034C-A 177 nt-3.37□□□□□ -2.95
Retrieved 100 of 7,029 protein–RNA pairs in 48.1 ms