Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.01■□□□□ 0.95
RTN3O95197 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.01■□□□□ 0.95
RTN3O95197 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.01■□□□□ 0.95
RTN3O95197 AL121829.2-201ENST00000620908 328 ntBASIC21.01■□□□□ 0.95
RTN3O95197 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RTN3O95197 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RTN3O95197 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC21■□□□□ 0.95
RTN3O95197 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21■□□□□ 0.95
RTN3O95197 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC21■□□□□ 0.95
RTN3O95197 PEX7-202ENST00000367756 680 ntTSL 3 BASIC21■□□□□ 0.95
RTN3O95197 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21■□□□□ 0.95
RTN3O95197 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
RTN3O95197 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21■□□□□ 0.95
RTN3O95197 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21■□□□□ 0.95
RTN3O95197 PRKY-204ENST00000533551 1019 ntBASIC21■□□□□ 0.95
RTN3O95197 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21■□□□□ 0.95
RTN3O95197 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21■□□□□ 0.95
RTN3O95197 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21■□□□□ 0.95
RTN3O95197 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21■□□□□ 0.95
RTN3O95197 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21■□□□□ 0.95
RTN3O95197 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RTN3O95197 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC20.99■□□□□ 0.95
RTN3O95197 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.99■□□□□ 0.95
RTN3O95197 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.99■□□□□ 0.95
RTN3O95197 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.99■□□□□ 0.95
RTN3O95197 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.99■□□□□ 0.95
RTN3O95197 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC20.99■□□□□ 0.95
RTN3O95197 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.99■□□□□ 0.95
RTN3O95197 AC093827.2-201ENST00000512654 315 ntBASIC20.99■□□□□ 0.95
RTN3O95197 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.99■□□□□ 0.95
RTN3O95197 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.99■□□□□ 0.95
RTN3O95197 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
RTN3O95197 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.99■□□□□ 0.95
RTN3O95197 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RTN3O95197 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RTN3O95197 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
RTN3O95197 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
RTN3O95197 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.98■□□□□ 0.95
RTN3O95197 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.98■□□□□ 0.95
RTN3O95197 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTN3O95197 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTN3O95197 AC239809.2-201ENST00000415381 517 ntBASIC20.98■□□□□ 0.95
RTN3O95197 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.98■□□□□ 0.95
RTN3O95197 AC133681.1-201ENST00000465482 601 ntBASIC20.98■□□□□ 0.95
RTN3O95197 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.98■□□□□ 0.95
RTN3O95197 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.98■□□□□ 0.95
RTN3O95197 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.98■□□□□ 0.95
RTN3O95197 AL121906.2-201ENST00000621597 723 ntBASIC20.98■□□□□ 0.95
RTN3O95197 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 AL023875.1-201ENST00000640777 796 ntBASIC20.98■□□□□ 0.95
RTN3O95197 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTN3O95197 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.98■□□□□ 0.95
RTN3O95197 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RTN3O95197 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RTN3O95197 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.98■□□□□ 0.95
RTN3O95197 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RTN3O95197 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.97■□□□□ 0.95
RTN3O95197 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.97■□□□□ 0.95
RTN3O95197 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.97■□□□□ 0.95
RTN3O95197 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.97■□□□□ 0.95
RTN3O95197 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.97■□□□□ 0.95
RTN3O95197 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.97■□□□□ 0.95
RTN3O95197 AC124016.1-201ENST00000609552 612 ntBASIC20.97■□□□□ 0.95
RTN3O95197 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RTN3O95197 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.97■□□□□ 0.95
RTN3O95197 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC20.97■□□□□ 0.95
RTN3O95197 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms