Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.77■□□□□ 0.6
LDB3O75112 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC18.77■□□□□ 0.6
LDB3O75112 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
LDB3O75112 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.77■□□□□ 0.6
LDB3O75112 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.77■□□□□ 0.6
LDB3O75112 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.77■□□□□ 0.6
LDB3O75112 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.77■□□□□ 0.6
LDB3O75112 UNC93B5-201ENST00000530315 699 ntBASIC18.77■□□□□ 0.6
LDB3O75112 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
LDB3O75112 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.77■□□□□ 0.6
LDB3O75112 SOX15-203ENST00000570788 1093 ntBASIC18.77■□□□□ 0.6
LDB3O75112 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.77■□□□□ 0.6
LDB3O75112 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LDB3O75112 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.77■□□□□ 0.59
LDB3O75112 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LDB3O75112 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
LDB3O75112 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.76■□□□□ 0.59
LDB3O75112 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.76■□□□□ 0.59
LDB3O75112 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.76■□□□□ 0.59
LDB3O75112 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.76■□□□□ 0.59
LDB3O75112 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 HES2-206ENST00000489730 730 ntTSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.76■□□□□ 0.59
LDB3O75112 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
LDB3O75112 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC18.76■□□□□ 0.59
LDB3O75112 AL691432.2-201ENST00000607222 2038 ntBASIC18.76■□□□□ 0.59
LDB3O75112 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
LDB3O75112 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
LDB3O75112 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 KRT16P6-202ENST00000425692 1426 ntBASIC18.75■□□□□ 0.59
LDB3O75112 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.75■□□□□ 0.59
LDB3O75112 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.75■□□□□ 0.59
LDB3O75112 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
LDB3O75112 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.75■□□□□ 0.59
LDB3O75112 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LDB3O75112 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LDB3O75112 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.74■□□□□ 0.59
LDB3O75112 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LDB3O75112 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.74■□□□□ 0.59
LDB3O75112 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
LDB3O75112 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LDB3O75112 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.74■□□□□ 0.59
LDB3O75112 MIR4651-201ENST00000582622 73 ntBASIC18.74■□□□□ 0.59
LDB3O75112 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.74■□□□□ 0.59
LDB3O75112 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.74■□□□□ 0.59
LDB3O75112 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LDB3O75112 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LDB3O75112 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms