Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.37■□□□□ 0.85
HOXC11O43248 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC20.37■□□□□ 0.85
HOXC11O43248 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.37■□□□□ 0.85
HOXC11O43248 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.37■□□□□ 0.85
HOXC11O43248 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.37■□□□□ 0.85
HOXC11O43248 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HOXC11O43248 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
HOXC11O43248 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.37■□□□□ 0.85
HOXC11O43248 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 AC092720.2-201ENST00000602388 1665 ntBASIC20.36■□□□□ 0.85
HOXC11O43248 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.36■□□□□ 0.85
HOXC11O43248 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.36■□□□□ 0.85
HOXC11O43248 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 AP003071.4-201ENST00000562276 1284 ntBASIC20.36■□□□□ 0.85
HOXC11O43248 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 LINC01023-201ENST00000606054 436 ntBASIC20.36■□□□□ 0.85
HOXC11O43248 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
HOXC11O43248 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.36■□□□□ 0.85
HOXC11O43248 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.36■□□□□ 0.85
HOXC11O43248 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HOXC11O43248 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
HOXC11O43248 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 FAM197Y1-201ENST00000421178 764 ntBASIC20.35■□□□□ 0.85
HOXC11O43248 AL355355.2-201ENST00000442321 338 ntBASIC20.35■□□□□ 0.85
HOXC11O43248 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.35■□□□□ 0.85
HOXC11O43248 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.35■□□□□ 0.85
HOXC11O43248 AP002982.1-201ENST00000492365 877 ntBASIC20.35■□□□□ 0.85
HOXC11O43248 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.35■□□□□ 0.85
HOXC11O43248 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.35■□□□□ 0.85
HOXC11O43248 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HOXC11O43248 KRT16P6-202ENST00000425692 1426 ntBASIC20.35■□□□□ 0.85
HOXC11O43248 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
HOXC11O43248 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HOXC11O43248 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
HOXC11O43248 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.34■□□□□ 0.85
HOXC11O43248 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
HOXC11O43248 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
HOXC11O43248 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
HOXC11O43248 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.34■□□□□ 0.85
HOXC11O43248 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC20.34■□□□□ 0.85
HOXC11O43248 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.34■□□□□ 0.85
HOXC11O43248 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
HOXC11O43248 AC116351.2-201ENST00000606540 1585 ntBASIC20.34■□□□□ 0.85
HOXC11O43248 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC20.33■□□□□ 0.85
HOXC11O43248 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
HOXC11O43248 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
HOXC11O43248 AC087499.1-201ENST00000418141 1075 ntBASIC20.33■□□□□ 0.85
HOXC11O43248 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.33■□□□□ 0.85
HOXC11O43248 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC11O43248 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
HOXC11O43248 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC11O43248 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
HOXC11O43248 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
HOXC11O43248 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC11O43248 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC11O43248 RNF165-205ENST00000588679 2904 ntBASIC20.32■□□□□ 0.84
HOXC11O43248 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.32■□□□□ 0.84
HOXC11O43248 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms