Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ushbp1Q8R370 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ushbp1Q8R370 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Ushbp1Q8R370 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ushbp1Q8R370 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC26.88■■□□□ 1.89
Ushbp1Q8R370 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Ushbp1Q8R370 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.87■■□□□ 1.89
Ushbp1Q8R370 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.86■■□□□ 1.89
Ushbp1Q8R370 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Ushbp1Q8R370 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ushbp1Q8R370 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Ushbp1Q8R370 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Ushbp1Q8R370 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Ushbp1Q8R370 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Ushbp1Q8R370 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
Ushbp1Q8R370 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
Ushbp1Q8R370 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Ushbp1Q8R370 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.81■■□□□ 1.88
Ushbp1Q8R370 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Ushbp1Q8R370 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
Ushbp1Q8R370 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Ushbp1Q8R370 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC26.79■■□□□ 1.88
Ushbp1Q8R370 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Ushbp1Q8R370 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
Ushbp1Q8R370 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Ushbp1Q8R370 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
Ushbp1Q8R370 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Ushbp1Q8R370 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
Ushbp1Q8R370 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Ushbp1Q8R370 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.75■■□□□ 1.87
Ushbp1Q8R370 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC26.74■■□□□ 1.87
Ushbp1Q8R370 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ushbp1Q8R370 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
Ushbp1Q8R370 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Ushbp1Q8R370 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ushbp1Q8R370 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Ushbp1Q8R370 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC26.71■■□□□ 1.87
Ushbp1Q8R370 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC26.7■■□□□ 1.86
Ushbp1Q8R370 Nkain2-201ENSMUST00000092602 558 ntBASIC26.7■■□□□ 1.86
Ushbp1Q8R370 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC26.7■■□□□ 1.86
Ushbp1Q8R370 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ushbp1Q8R370 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Ushbp1Q8R370 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
Ushbp1Q8R370 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Ushbp1Q8R370 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC26.68■■□□□ 1.86
Ushbp1Q8R370 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC26.68■■□□□ 1.86
Ushbp1Q8R370 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ushbp1Q8R370 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ushbp1Q8R370 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
Ushbp1Q8R370 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.67■■□□□ 1.86
Ushbp1Q8R370 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ushbp1Q8R370 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ushbp1Q8R370 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ushbp1Q8R370 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.85
Ushbp1Q8R370 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ushbp1Q8R370 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ushbp1Q8R370 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Ushbp1Q8R370 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ushbp1Q8R370 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC26.62■■□□□ 1.85
Ushbp1Q8R370 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
Ushbp1Q8R370 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ushbp1Q8R370 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Ushbp1Q8R370 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.61■■□□□ 1.85
Ushbp1Q8R370 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
Ushbp1Q8R370 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Ushbp1Q8R370 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC26.58■■□□□ 1.85
Ushbp1Q8R370 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC26.58■■□□□ 1.84
Ushbp1Q8R370 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Ushbp1Q8R370 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Ushbp1Q8R370 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC26.57■■□□□ 1.84
Ushbp1Q8R370 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Ushbp1Q8R370 Gm7432-201ENSMUST00000210343 879 ntBASIC26.57■■□□□ 1.84
Ushbp1Q8R370 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Ushbp1Q8R370 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Ushbp1Q8R370 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ushbp1Q8R370 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Ushbp1Q8R370 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ushbp1Q8R370 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ushbp1Q8R370 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Ushbp1Q8R370 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
Ushbp1Q8R370 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ushbp1Q8R370 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Ushbp1Q8R370 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC26.5■■□□□ 1.83
Ushbp1Q8R370 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Ushbp1Q8R370 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
Ushbp1Q8R370 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
Ushbp1Q8R370 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Ushbp1Q8R370 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC26.47■■□□□ 1.83
Ushbp1Q8R370 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Ushbp1Q8R370 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
Ushbp1Q8R370 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC26.45■■□□□ 1.83
Ushbp1Q8R370 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Ushbp1Q8R370 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.82
Ushbp1Q8R370 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC26.45■■□□□ 1.82
Retrieved 100 of 76,532 protein–RNA pairs in 109 ms