Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Nkx2-1P50220 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Nkx2-1P50220 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nkx2-1P50220 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nkx2-1P50220 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Nkx2-1P50220 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Nkx2-1P50220 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx2-1P50220 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx2-1P50220 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC19.62■□□□□ 0.73
Nkx2-1P50220 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx2-1P50220 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx2-1P50220 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Nkx2-1P50220 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.61■□□□□ 0.73
Nkx2-1P50220 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx2-1P50220 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx2-1P50220 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx2-1P50220 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Nkx2-1P50220 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx2-1P50220 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx2-1P50220 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx2-1P50220 Pcf11-205ENSMUST00000208255 1720 ntBASIC19.6■□□□□ 0.73
Nkx2-1P50220 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Nkx2-1P50220 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Nkx2-1P50220 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx2-1P50220 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx2-1P50220 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Nkx2-1P50220 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
Nkx2-1P50220 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Nkx2-1P50220 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
Nkx2-1P50220 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.57■□□□□ 0.72
Nkx2-1P50220 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Nkx2-1P50220 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx2-1P50220 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx2-1P50220 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx2-1P50220 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Nkx2-1P50220 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Nkx2-1P50220 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Nkx2-1P50220 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Nkx2-1P50220 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Nkx2-1P50220 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Nkx2-1P50220 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Nkx2-1P50220 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Nkx2-1P50220 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Nkx2-1P50220 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Nkx2-1P50220 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Nkx2-1P50220 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Nkx2-1P50220 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
Nkx2-1P50220 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.51■□□□□ 0.71
Nkx2-1P50220 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Nkx2-1P50220 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-1P50220 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-1P50220 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Nkx2-1P50220 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Nkx2-1P50220 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-1P50220 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
Nkx2-1P50220 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Nkx2-1P50220 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-1P50220 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-1P50220 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-1P50220 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Nkx2-1P50220 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Nkx2-1P50220 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC19.46■□□□□ 0.71
Nkx2-1P50220 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-1P50220 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Nkx2-1P50220 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Nkx2-1P50220 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-1P50220 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-1P50220 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-1P50220 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Nkx2-1P50220 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Nkx2-1P50220 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-1P50220 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-1P50220 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Nkx2-1P50220 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nkx2-1P50220 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nkx2-1P50220 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nkx2-1P50220 Gm16148-201ENSMUST00000119653 893 ntBASIC19.42■□□□□ 0.7
Nkx2-1P50220 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Nkx2-1P50220 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nkx2-1P50220 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.41■□□□□ 0.7
Nkx2-1P50220 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-1P50220 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-1P50220 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.4■□□□□ 0.7
Nkx2-1P50220 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nkx2-1P50220 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nkx2-1P50220 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-1P50220 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nkx2-1P50220 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Nkx2-1P50220 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 25.7 ms