Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
Pcdh1F7BJK1 Gm16148-201ENSMUST00000119653 893 ntBASIC21.48■■□□□ 1.03
Pcdh1F7BJK1 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pcdh1F7BJK1 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdh1F7BJK1 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.47■■□□□ 1.03
Pcdh1F7BJK1 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdh1F7BJK1 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pcdh1F7BJK1 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pcdh1F7BJK1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Pcdh1F7BJK1 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Pcdh1F7BJK1 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.45■■□□□ 1.02
Pcdh1F7BJK1 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Pcdh1F7BJK1 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC21.44■■□□□ 1.02
Pcdh1F7BJK1 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdh1F7BJK1 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pcdh1F7BJK1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pcdh1F7BJK1 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pcdh1F7BJK1 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Pcdh1F7BJK1 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pcdh1F7BJK1 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Pcdh1F7BJK1 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdh1F7BJK1 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdh1F7BJK1 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdh1F7BJK1 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pcdh1F7BJK1 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
Pcdh1F7BJK1 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pcdh1F7BJK1 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pcdh1F7BJK1 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pcdh1F7BJK1 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdh1F7BJK1 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.35■■□□□ 1.01
Pcdh1F7BJK1 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pcdh1F7BJK1 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Pcdh1F7BJK1 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdh1F7BJK1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.34■■□□□ 1.01
Pcdh1F7BJK1 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdh1F7BJK1 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pcdh1F7BJK1 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.33■■□□□ 1.01
Pcdh1F7BJK1 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pcdh1F7BJK1 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdh1F7BJK1 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pcdh1F7BJK1 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pcdh1F7BJK1 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Pcdh1F7BJK1 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdh1F7BJK1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pcdh1F7BJK1 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.3■■□□□ 1
Pcdh1F7BJK1 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdh1F7BJK1 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdh1F7BJK1 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Pcdh1F7BJK1 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdh1F7BJK1 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Pcdh1F7BJK1 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdh1F7BJK1 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Pcdh1F7BJK1 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
Pcdh1F7BJK1 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Pcdh1F7BJK1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Pcdh1F7BJK1 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdh1F7BJK1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Pcdh1F7BJK1 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdh1F7BJK1 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdh1F7BJK1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdh1F7BJK1 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Pcdh1F7BJK1 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdh1F7BJK1 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Pcdh1F7BJK1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
Pcdh1F7BJK1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Pcdh1F7BJK1 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Pcdh1F7BJK1 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.21■□□□□ 0.99
Pcdh1F7BJK1 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdh1F7BJK1 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdh1F7BJK1 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.2■□□□□ 0.98
Pcdh1F7BJK1 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Pcdh1F7BJK1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Pcdh1F7BJK1 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdh1F7BJK1 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdh1F7BJK1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdh1F7BJK1 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Pcdh1F7BJK1 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdh1F7BJK1 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Pcdh1F7BJK1 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms