Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
Pcdh1F7BJK1 Gm25239-201ENSMUST00000174915 86 ntBASIC31.05■■■□□ 2.56
Pcdh1F7BJK1 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
Pcdh1F7BJK1 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
Pcdh1F7BJK1 Psd-208ENSMUST00000224556 2034 ntBASIC29.37■■■□□ 2.29
Pcdh1F7BJK1 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
Pcdh1F7BJK1 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
Pcdh1F7BJK1 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
Pcdh1F7BJK1 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
Pcdh1F7BJK1 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Pcdh1F7BJK1 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Pcdh1F7BJK1 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Pcdh1F7BJK1 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Pcdh1F7BJK1 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Pcdh1F7BJK1 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Pcdh1F7BJK1 Gm15042-201ENSMUST00000120212 883 ntBASIC27.96■■■□□ 2.07
Pcdh1F7BJK1 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.87■■■□□ 2.05
Pcdh1F7BJK1 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
Pcdh1F7BJK1 Gm15045-201ENSMUST00000117359 883 ntBASIC27.54■■■□□ 2
Pcdh1F7BJK1 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.52■■■□□ 2
Pcdh1F7BJK1 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
Pcdh1F7BJK1 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
Pcdh1F7BJK1 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC27.3■■□□□ 1.96
Pcdh1F7BJK1 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
Pcdh1F7BJK1 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
Pcdh1F7BJK1 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Pcdh1F7BJK1 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC27.04■■□□□ 1.92
Pcdh1F7BJK1 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Pcdh1F7BJK1 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC27.03■■□□□ 1.92
Pcdh1F7BJK1 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Pcdh1F7BJK1 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Pcdh1F7BJK1 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC26.93■■□□□ 1.9
Pcdh1F7BJK1 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.88■■□□□ 1.89
Pcdh1F7BJK1 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.81■■□□□ 1.88
Pcdh1F7BJK1 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
Pcdh1F7BJK1 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Pcdh1F7BJK1 Gm24109-201ENSMUST00000175489 103 ntBASIC26.65■■□□□ 1.86
Pcdh1F7BJK1 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Pcdh1F7BJK1 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.53■■□□□ 1.84
Pcdh1F7BJK1 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Pcdh1F7BJK1 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pcdh1F7BJK1 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.4■■□□□ 1.82
Pcdh1F7BJK1 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC26.33■■□□□ 1.81
Pcdh1F7BJK1 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Pcdh1F7BJK1 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Pcdh1F7BJK1 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pcdh1F7BJK1 Gm42596-201ENSMUST00000196305 1958 ntBASIC26.18■■□□□ 1.78
Pcdh1F7BJK1 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Pcdh1F7BJK1 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pcdh1F7BJK1 Gm23366-201ENSMUST00000175022 89 ntBASIC26.03■■□□□ 1.76
Pcdh1F7BJK1 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Pcdh1F7BJK1 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Pcdh1F7BJK1 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Pcdh1F7BJK1 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Pcdh1F7BJK1 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Pcdh1F7BJK1 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.75
Pcdh1F7BJK1 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Pcdh1F7BJK1 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Pcdh1F7BJK1 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Pcdh1F7BJK1 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Pcdh1F7BJK1 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Pcdh1F7BJK1 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.83■■□□□ 1.73
Pcdh1F7BJK1 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.76■■□□□ 1.72
Pcdh1F7BJK1 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Pcdh1F7BJK1 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC25.69■■□□□ 1.7
Pcdh1F7BJK1 AC153911.1-202ENSMUST00000218534 1034 ntBASIC25.68■■□□□ 1.7
Pcdh1F7BJK1 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
Pcdh1F7BJK1 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC25.65■■□□□ 1.7
Pcdh1F7BJK1 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
Pcdh1F7BJK1 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
Pcdh1F7BJK1 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
Pcdh1F7BJK1 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
Pcdh1F7BJK1 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
Pcdh1F7BJK1 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
Pcdh1F7BJK1 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC25.38■■□□□ 1.65
Pcdh1F7BJK1 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Pcdh1F7BJK1 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
Pcdh1F7BJK1 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
Pcdh1F7BJK1 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.28■■□□□ 1.64
Pcdh1F7BJK1 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
Pcdh1F7BJK1 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Pcdh1F7BJK1 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Pcdh1F7BJK1 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Pcdh1F7BJK1 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Pcdh1F7BJK1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Pcdh1F7BJK1 Cadm4-201ENSMUST00000068023 2161 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Pcdh1F7BJK1 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
Pcdh1F7BJK1 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Pcdh1F7BJK1 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Pcdh1F7BJK1 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Pcdh1F7BJK1 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC24.91■■□□□ 1.58
Pcdh1F7BJK1 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Pcdh1F7BJK1 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Pcdh1F7BJK1 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Pcdh1F7BJK1 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Pcdh1F7BJK1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.85■■□□□ 1.57
Pcdh1F7BJK1 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdh1F7BJK1 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
Pcdh1F7BJK1 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Pcdh1F7BJK1 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Retrieved 100 of 76,532 protein–RNA pairs in 8.5 ms