Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL662791.1-201ENST00000441992 928 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AL590609.1-201ENST00000442164 328 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC093655.1-201ENST00000446187 641 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 FGF12-206ENST00000450716 768 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 RPL35AP19-201ENST00000469425 329 ntBASIC7.9□□□□□ -1.14
MSX1P28360 IGKV1-16-201ENST00000479981 378 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
MSX1P28360 RN7SL630P-201ENST00000483714 297 ntBASIC7.9□□□□□ -1.14
MSX1P28360 SCG5-206ENST00000494364 1148 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 ARL2BPP4-201ENST00000506854 471 ntBASIC7.9□□□□□ -1.14
MSX1P28360 LINC02058-201ENST00000507491 707 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 AC091182.2-201ENST00000520431 578 ntTSL 4 BASIC7.9□□□□□ -1.14
MSX1P28360 OR5AZ1P-201ENST00000527448 943 ntBASIC7.9□□□□□ -1.14
MSX1P28360 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC7.9□□□□□ -1.14
MSX1P28360 LINC02413-202ENST00000552353 898 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 AC120498.4-201ENST00000561649 320 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 AC138907.5-201ENST00000561744 273 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 AC093249.5-201ENST00000568120 430 ntBASIC7.9□□□□□ -1.14
MSX1P28360 RN7SL203P-201ENST00000579600 296 ntBASIC7.9□□□□□ -1.14
MSX1P28360 RN7SL118P-201ENST00000580570 302 ntBASIC7.9□□□□□ -1.14
MSX1P28360 RPL17-212ENST00000581373 584 ntTSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 EIF1P6-201ENST00000600054 334 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AP000907.4-201ENST00000604143 237 ntBASIC7.9□□□□□ -1.14
MSX1P28360 uc_338.2-201ENST00000612963 182 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC009053.4-201ENST00000614366 108 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AL607023.1-201ENST00000620045 248 ntBASIC7.9□□□□□ -1.14
MSX1P28360 RBMS3-AS2-207ENST00000629416 456 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 LINC00710-219ENST00000635054 938 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 snoMe28S-Am2634.2-201ENST00000637869 80 ntBASIC7.9□□□□□ -1.14
MSX1P28360 AC092329.4-205ENST00000638822 574 ntTSL 3 BASIC7.9□□□□□ -1.14
MSX1P28360 NDUFA9-201ENST00000266544 8363 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
MSX1P28360 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 PREPL-208ENST00000410081 3080 ntAPPRIS P1 TSL 5 BASIC7.9□□□□□ -1.14
MSX1P28360 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC7.9□□□□□ -1.14
MSX1P28360 CAST-213ENST00000504465 2336 ntAPPRIS ALT2 TSL 2 BASIC7.9□□□□□ -1.15
MSX1P28360 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
MSX1P28360 DICER1-204ENST00000527414 6179 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.15
MSX1P28360 SCMH1-205ENST00000372595 3231 ntTSL 1 (best) BASIC7.9□□□□□ -1.15
MSX1P28360 NOS1-202ENST00000338101 4462 ntTSL 5 BASIC7.9□□□□□ -1.15
MSX1P28360 ZNF197-205ENST00000396058 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AC026887.1-201ENST00000624657 2985 ntBASIC7.89□□□□□ -1.15
MSX1P28360 GPNMB-202ENST00000381990 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 IL18R1-201ENST00000233957 3661 ntAPPRIS P1 TSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 MRPL30-201ENST00000338148 2605 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 NRG3-204ENST00000404576 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 ATG13-201ENST00000359513 4348 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 ZNF248-208ENST00000611278 4204 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AC010132.4-201ENST00000569883 1368 ntBASIC7.89□□□□□ -1.15
MSX1P28360 NR1I3-204ENST00000367982 1322 ntAPPRIS ALT1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 IFT43-201ENST00000238628 816 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 AC104699.1-201ENST00000352271 414 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
MSX1P28360 SNORA58.1-201ENST00000364133 136 ntBASIC7.89□□□□□ -1.15
MSX1P28360 RNU6-259P-201ENST00000383999 107 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC121334.1-201ENST00000396414 802 ntBASIC7.89□□□□□ -1.15
MSX1P28360 MIR1277-201ENST00000408536 78 ntBASIC7.89□□□□□ -1.15
MSX1P28360 TPMTP3-201ENST00000411928 735 ntBASIC7.89□□□□□ -1.15
MSX1P28360 RPL7L1P12-201ENST00000417594 729 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AL049734.1-201ENST00000422384 608 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 AP003385.1-201ENST00000426387 893 ntBASIC7.89□□□□□ -1.15
MSX1P28360 Z68871.1-201ENST00000426528 1133 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 AC244034.1-201ENST00000428027 792 ntBASIC7.89□□□□□ -1.15
MSX1P28360 ATP5G1P5-201ENST00000429024 411 ntBASIC7.89□□□□□ -1.15
MSX1P28360 RPS23P8-201ENST00000429775 330 ntBASIC7.89□□□□□ -1.15
MSX1P28360 TMEM127-203ENST00000435268 582 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 TRIM60P18-201ENST00000441518 828 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 AL592437.1-201ENST00000443781 492 ntBASIC7.89□□□□□ -1.15
MSX1P28360 RNF216-IT1-201ENST00000443837 337 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 OR11I1P-201ENST00000486033 954 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC104971.1-201ENST00000495117 578 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC7.89□□□□□ -1.15
MSX1P28360 JRKL-AS1-201ENST00000511243 426 ntTSL 2 BASIC7.89□□□□□ -1.15
MSX1P28360 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC7.89□□□□□ -1.15
MSX1P28360 SCARNA15.1-201ENST00000516384 125 ntBASIC7.89□□□□□ -1.15
MSX1P28360 AC091820.2-201ENST00000521697 523 ntTSL 4 BASIC7.89□□□□□ -1.15
MSX1P28360 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 AC027779.1-201ENST00000530492 516 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 AC022796.1-202ENST00000531882 477 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 SLC5A4P1-201ENST00000532944 612 ntBASIC7.89□□□□□ -1.15
MSX1P28360 OVCH1-AS1-201ENST00000549411 743 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 AC069228.1-202ENST00000550272 737 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 DAZAP2-210ENST00000551313 587 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 NTS-203ENST00000551529 801 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 AC087639.1-201ENST00000560974 920 ntBASIC7.89□□□□□ -1.15
MSX1P28360 LINC02134-201ENST00000562980 557 ntTSL 5 BASIC7.89□□□□□ -1.15
MSX1P28360 AC005722.3-201ENST00000580884 446 ntTSL 3 BASIC7.89□□□□□ -1.15
MSX1P28360 ZNF559-205ENST00000586255 1016 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 113.1 ms