Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 REG4-203ENST00000369401 2327 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 EXOC6-201ENST00000260762 3564 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 B3GNT2-202ENST00000405767 2436 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 SNRPD1-201ENST00000300413 4909 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 ZNF415-213ENST00000597503 2469 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 RNA5SP378-201ENST00000363646 120 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 COQ3-202ENST00000369240 646 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AL080285.1-201ENST00000404225 984 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 MIR1231-201ENST00000408101 92 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 PPP1R17-202ENST00000409146 569 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 OR2L1P-201ENST00000422727 938 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 OR5W1P-201ENST00000423705 938 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 RBMY2JP-201ENST00000425544 1059 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 CR769776.1-201ENST00000441254 787 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 TULP3P1-201ENST00000442322 816 ntTSL 3 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 HSFY3P-201ENST00000444242 1191 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 OR13K1P-201ENST00000444577 975 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 SEPT14P24-201ENST00000447236 180 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 TRY2P-201ENST00000448860 689 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 KIF3AP1-201ENST00000454055 611 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 HNRNPDLP3-201ENST00000456745 380 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 RPL10P6-201ENST00000457497 318 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC007731.3-201ENST00000458154 446 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC009269.1-202ENST00000484381 469 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 RN7SL124P-201ENST00000498656 285 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC068134.3-201ENST00000513620 788 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC068305.2-201ENST00000550567 1205 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 MRPS36P5-201ENST00000551909 298 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 TGFB3-AS1-201ENST00000553732 580 ntTSL 4 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AL356801.1-201ENST00000559320 294 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 MMP2-AS1-202ENST00000569037 553 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC005410.2-201ENST00000580270 463 ntTSL 3 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 TPGS2-204ENST00000587129 841 ntTSL 4 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 DUXAP3-201ENST00000603616 594 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC239600.2-201ENST00000619615 1165 ntBASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 UGP2-232ENST00000640075 567 ntTSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 OXCT1-205ENST00000510634 1441 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 BCAT1-202ENST00000342945 4319 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 UGT2B28-202ENST00000511240 1525 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 SH3D19-202ENST00000409252 4888 ntAPPRIS P3 TSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 GPX6-204ENST00000612264 1709 ntAPPRIS ALT1 TSL 5 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 ZEB2-205ENST00000419938 1755 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 GLI1-201ENST00000228682 3613 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 MFSD8-207ENST00000513559 1813 ntTSL 2 BASIC8.68□□□□□ -1.02
TRAIPQ9BWF2 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 OR9M1P-202ENST00000641564 3163 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 ZNF512-203ENST00000413371 3703 ntTSL 2 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 HPS4-201ENST00000336873 3786 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RN7SKP50-201ENST00000364694 315 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 PPCS-204ENST00000372562 966 ntTSL 2 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 LST1-211ENST00000376110 433 ntTSL 3 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 CDKL5-202ENST00000379996 3449 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 Y_RNA.578-201ENST00000390903 88 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 CCDC62-203ENST00000392440 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 TMEM126B-202ENST00000393375 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 NHP2P2-201ENST00000396362 460 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 PKMP3-201ENST00000405497 715 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 NLK-201ENST00000407008 4047 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 GPX5-201ENST00000412168 1540 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RBMY2GP-201ENST00000418671 1034 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC023128.2-201ENST00000420880 1223 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 SLC9B1P4-201ENST00000421957 1288 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC006017.1-201ENST00000424630 673 ntTSL 3 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 OR6R1P-201ENST00000431838 940 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RBMY2NP-201ENST00000434454 1028 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC009988.1-201ENST00000434988 310 ntTSL 5 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 TRAPPC13P1-201ENST00000435991 1062 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 ACKR2-202ENST00000442925 2879 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC244021.2-201ENST00000445260 529 ntTSL 5 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RPL34P26-201ENST00000445636 354 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC239798.1-201ENST00000449024 1176 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 MARK2P10-201ENST00000454959 1437 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RN7SL815P-201ENST00000470970 290 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 MTCO3P35-201ENST00000485582 781 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 RPS12P31-201ENST00000491419 398 ntBASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 LRP4-AS1-201ENST00000502049 1504 ntTSL 2 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC8.67□□□□□ -1.02
TRAIPQ9BWF2 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC8.67□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms