Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LDB3-201ENST00000263066 3873 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 LOXHD1-201ENST00000300591 3970 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 RNF14-202ENST00000356143 3999 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 EYA4-201ENST00000355167 5692 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A1P20908 POGZ-201ENST00000271715 6626 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 KCNMA1-248ENST00000638991 11990 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
COL5A1P20908 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A1P20908 AC034111.1-201ENST00000562143 3770 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A1P20908 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL5A1P20908 ENO1P4-201ENST00000416471 1785 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.59□□□□□ -1.35
COL5A1P20908 MIR1204-201ENST00000408388 67 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A1P20908 GAPDHP33-201ENST00000443168 1013 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A1P20908 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A1P20908 AC094085.1-201ENST00000468914 584 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 LINC01093-201ENST00000506479 634 ntTSL 3 BASIC6.59□□□□□ -1.35
COL5A1P20908 AC135983.3-201ENST00000528049 1226 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC6.59□□□□□ -1.35
COL5A1P20908 NXPE2P1-201ENST00000543705 726 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 FXNP1-201ENST00000555153 337 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 RN7SL270P-201ENST00000579643 281 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 AC063977.7-201ENST00000594454 337 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 AL122023.1-201ENST00000622847 530 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 AC022400.9-201ENST00000623633 273 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 OR8B9P-202ENST00000642028 5216 ntBASIC6.59□□□□□ -1.35
COL5A1P20908 NR5A2-206ENST00000544748 4775 ntAPPRIS ALT1 TSL 2 BASIC6.59□□□□□ -1.35
COL5A1P20908 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL5A1P20908 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
COL5A1P20908 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.36
COL5A1P20908 RALBP1-206ENST00000609094 3676 ntTSL 2 BASIC6.59□□□□□ -1.36
COL5A1P20908 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
COL5A1P20908 ZNF320-201ENST00000391781 6074 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 PAN2-202ENST00000425394 5372 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 CYFIP2-201ENST00000435847 3673 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 AL121949.2-201ENST00000403446 1548 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 FAM19A2-211ENST00000550003 2499 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 MLH1-206ENST00000435176 2428 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 AQP4-AS1-201ENST00000568797 3119 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 VIRMA-202ENST00000421249 3924 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A1P20908 YWHAZP6-201ENST00000399764 738 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AL050344.1-201ENST00000424084 490 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 PSMD10P2-201ENST00000432890 672 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 HMGN1P6-201ENST00000438508 291 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AC100823.1-201ENST00000442274 480 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 AL020997.1-201ENST00000446554 349 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 COX4I1P2-201ENST00000447446 547 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC084121.1-201ENST00000533882 835 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 AL161757.4-202ENST00000557467 737 ntTSL 3 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC008555.7-201ENST00000605008 583 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 SNORD96A-201ENST00000606577 79 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 BACH1-IT2-202ENST00000608072 691 ntTSL 5 BASIC6.58□□□□□ -1.36
COL5A1P20908 Metazoa_SRP.129-201ENST00000619776 251 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 AC104447.1-201ENST00000624214 2124 ntBASIC6.58□□□□□ -1.36
COL5A1P20908 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
COL5A1P20908 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC6.58□□□□□ -1.36
COL5A1P20908 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.58□□□□□ -1.36
COL5A1P20908 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 AP002001.1-202ENST00000525797 1754 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 AKR1C2-201ENST00000380753 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 HBS1L-205ENST00000367837 7163 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 NCAM2-202ENST00000400546 8135 ntAPPRIS P2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 OVAAL-201ENST00000442621 1489 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 KIF18A-201ENST00000263181 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 DAZ2-208ENST00000400493 3516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
COL5A1P20908 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A1P20908 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC6.57□□□□□ -1.36
COL5A1P20908 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
COL5A1P20908 RN7SKP237-201ENST00000364663 301 ntBASIC6.57□□□□□ -1.36
COL5A1P20908 MIR188-201ENST00000385034 86 ntBASIC6.57□□□□□ -1.36
COL5A1P20908 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
COL5A1P20908 RN7SKP232-201ENST00000410170 290 ntBASIC6.57□□□□□ -1.36
COL5A1P20908 AC244452.1-201ENST00000413798 141 ntBASIC6.57□□□□□ -1.36
COL5A1P20908 AC099782.1-201ENST00000425889 474 ntBASIC6.57□□□□□ -1.36
COL5A1P20908 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6.57□□□□□ -1.36
COL5A1P20908 RPL5P7-201ENST00000444235 813 ntBASIC6.57□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms