Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNA5SP301-201ENST00000362537 121 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 RBBP4P4-201ENST00000398588 1289 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 CCDC148-AS1-201ENST00000412781 795 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 AC109638.1-201ENST00000417406 326 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 RPSA-202ENST00000443003 1032 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 GTF2F2P2-201ENST00000445825 721 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 AC002486.2-201ENST00000447806 590 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 PMS2P11-201ENST00000451831 574 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC146944.3-201ENST00000509969 371 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 AC106774.2-201ENST00000510266 406 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 SPINK13-203ENST00000512953 1022 ntAPPRIS P2 TSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC117383.2-201ENST00000514722 322 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 SNORA70.17-201ENST00000516449 133 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 AC120036.3-201ENST00000517826 292 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 IGLV1-62-201ENST00000518003 441 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 ST13P6-201ENST00000522430 1102 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 C11orf70-202ENST00000526781 845 ntTSL 3 BASIC8.64□□□□□ -1.03
HMGB1P09429 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
HMGB1P09429 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC044860.3-201ENST00000559957 368 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 BMS1P8-201ENST00000565049 1178 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC015801.1-201ENST00000585651 153 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 CASC19-212ENST00000641153 1287 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 OR5AU1-204ENST00000641822 1197 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC8.64□□□□□ -1.03
HMGB1P09429 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 ARHGAP24-202ENST00000395183 2740 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 WDR44-202ENST00000371822 3877 ntTSL 2 BASIC8.64□□□□□ -1.03
HMGB1P09429 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 AC083806.2-201ENST00000617795 2685 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
HMGB1P09429 CNOT6LP1-201ENST00000559681 1462 ntBASIC8.64□□□□□ -1.03
HMGB1P09429 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 CLCN5-201ENST00000307367 3177 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 AJ009632.1-201ENST00000433588 1376 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 SLC30A8-208ENST00000521243 1393 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 UFL1-201ENST00000369278 4224 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 KARSP2-201ENST00000415696 1639 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 CEP57-207ENST00000537677 1647 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ZNF257-203ENST00000594947 3874 ntAPPRIS P1 TSL 4 BASIC8.63□□□□□ -1.03
HMGB1P09429 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 RNU1-38P-201ENST00000362817 144 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 AL050320.1-201ENST00000420044 446 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 AL133232.1-201ENST00000458293 483 ntTSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 RN7SL791P-201ENST00000467868 295 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 RN7SL228P-201ENST00000470060 303 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 SSR1-206ENST00000479365 1118 ntTSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 RN7SL314P-201ENST00000490735 292 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 GAPDHP38-201ENST00000503632 1002 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 RGS5-220ENST00000528689 566 ntTSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC012181.2-201ENST00000570210 699 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 MTND2P13-201ENST00000577438 1039 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 SNORD39.2-201ENST00000579995 76 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 AC011447.3-202ENST00000593655 555 ntTSL 4 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC090953.1-201ENST00000604305 1092 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 AL590396.3-201ENST00000636334 300 ntBASIC8.63□□□□□ -1.03
HMGB1P09429 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ST7-203ENST00000393443 2360 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
HMGB1P09429 ASAH1-227ENST00000636455 1777 ntTSL 5 BASIC8.63□□□□□ -1.03
HMGB1P09429 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 AC013562.1-201ENST00000519427 1722 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC8.63□□□□□ -1.03
HMGB1P09429 PSG6-201ENST00000187910 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 CDKL5-201ENST00000379989 3463 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 OR2T7-201ENST00000641057 3463 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
HMGB1P09429 PLXNA4-201ENST00000321063 13061 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
HMGB1P09429 SPARCL1-201ENST00000282470 2906 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
HMGB1P09429 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms