Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 STARD5-201ENST00000302824 4871 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 AC104966.1-201ENST00000467010 1464 ntBASIC11.32□□□□□ -0.6
CUX1P39880 KCNK10-203ENST00000340700 7501 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 SLFN12L-202ENST00000361112 2752 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
CUX1P39880 LEO1-201ENST00000299601 2193 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CUX1P39880 ZC3H8-202ENST00000409573 5965 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
CUX1P39880 AC008080.4-201ENST00000420185 1589 ntTSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 CDH12-202ENST00000504376 4160 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CUX1P39880 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC11.32□□□□□ -0.6
CUX1P39880 CNTRL-212ENST00000613863 2418 ntTSL 5 BASIC11.31□□□□□ -0.6
CUX1P39880 OR5M2P-202ENST00000641241 4242 ntBASIC11.31□□□□□ -0.6
CUX1P39880 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 AC007938.1-201ENST00000562524 2902 ntBASIC11.31□□□□□ -0.6
CUX1P39880 LYRM7-201ENST00000379380 6351 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 TANK-203ENST00000402568 878 ntTSL 5 BASIC11.31□□□□□ -0.6
CUX1P39880 AC115283.1-201ENST00000427353 400 ntBASIC11.31□□□□□ -0.6
CUX1P39880 PMS2P9-201ENST00000441237 515 ntBASIC11.31□□□□□ -0.6
CUX1P39880 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC11.31□□□□□ -0.6
CUX1P39880 FXNP1-201ENST00000555153 337 ntBASIC11.31□□□□□ -0.6
CUX1P39880 AC005632.2-201ENST00000564271 828 ntBASIC11.31□□□□□ -0.6
CUX1P39880 RN7SL366P-201ENST00000577957 292 ntBASIC11.31□□□□□ -0.6
CUX1P39880 SYPL1P2-201ENST00000582878 727 ntBASIC11.31□□□□□ -0.6
CUX1P39880 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC11.31□□□□□ -0.6
CUX1P39880 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CUX1P39880 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC11.31□□□□□ -0.6
CUX1P39880 KIAA1328-207ENST00000591619 5881 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 MRPS18C-201ENST00000295491 1643 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 HNRNPC-211ENST00000554455 1784 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC11.31□□□□□ -0.6
CUX1P39880 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CUX1P39880 ADGRG6-201ENST00000230173 7026 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 SHROOM4-202ENST00000376020 9556 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 RBBP4P4-201ENST00000398588 1289 ntBASIC11.3□□□□□ -0.6
CUX1P39880 RPL5P20-201ENST00000403848 896 ntBASIC11.3□□□□□ -0.6
CUX1P39880 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 AL160004.1-201ENST00000434311 478 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 AC018638.3-201ENST00000461273 132 ntBASIC11.3□□□□□ -0.6
CUX1P39880 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 AC055733.3-201ENST00000505214 523 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AC012560.1-203ENST00000510550 595 ntTSL 4 BASIC11.3□□□□□ -0.6
CUX1P39880 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC11.3□□□□□ -0.6
CUX1P39880 MIR7515HG-235ENST00000590865 918 ntTSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 AL662797.2-201ENST00000607333 527 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 COL28A1-201ENST00000399429 4277 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 PTAFR-202ENST00000373857 4491 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 DRP2-203ENST00000402866 7018 ntAPPRIS P3 TSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 ATG13-203ENST00000524625 4014 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 AC016582.1-202ENST00000636341 2982 ntBASIC11.3□□□□□ -0.6
CUX1P39880 IPO7P2-201ENST00000451446 1750 ntBASIC11.3□□□□□ -0.6
CUX1P39880 RERGL-201ENST00000229002 1147 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 AL590240.2-201ENST00000413370 894 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC11.3□□□□□ -0.6
CUX1P39880 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC11.3□□□□□ -0.6
CUX1P39880 GTF3AP6-201ENST00000432585 986 ntBASIC11.3□□□□□ -0.6
CUX1P39880 ANKRD54P1-201ENST00000433115 471 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 PPIAP20-201ENST00000449839 135 ntBASIC11.3□□□□□ -0.6
CUX1P39880 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CUX1P39880 GLRXP3-201ENST00000470810 321 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AC093719.1-201ENST00000480427 441 ntBASIC11.3□□□□□ -0.6
CUX1P39880 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 VEPH1-219ENST00000537559 992 ntTSL 5 BASIC11.3□□□□□ -0.6
CUX1P39880 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC11.3□□□□□ -0.6
CUX1P39880 AC023827.2-201ENST00000566880 1061 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AC002519.2-203ENST00000567043 837 ntBASIC11.3□□□□□ -0.6
CUX1P39880 AL080312.2-201ENST00000613001 630 ntBASIC11.3□□□□□ -0.6
CUX1P39880 SYNJ1-203ENST00000382499 7094 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC11.29□□□□□ -0.6
CUX1P39880 LINC01588-202ENST00000528300 3208 ntTSL 2 BASIC11.29□□□□□ -0.6
CUX1P39880 ZNF658-206ENST00000621410 4025 ntAPPRIS P1 TSL 2 BASIC11.29□□□□□ -0.6
CUX1P39880 NXT2-203ENST00000372106 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 ZNF438-201ENST00000331737 3243 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 CABYR-202ENST00000399481 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 DPF3-203ENST00000541685 4077 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CUX1P39880 DNAH11-201ENST00000328843 13917 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
CUX1P39880 TRPM3-214ENST00000396292 4740 ntAPPRIS P4 TSL 5 BASIC11.29□□□□□ -0.6
CUX1P39880 SNORA38B-201ENST00000363524 131 ntBASIC11.29□□□□□ -0.6
CUX1P39880 SMARCE1P6-201ENST00000398372 1216 ntBASIC11.29□□□□□ -0.6
CUX1P39880 RANP6-201ENST00000413691 644 ntBASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms