Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ATP9A-201ENST00000311637 7437 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL4A5P29400 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC8.09□□□□□ -1.11
COL4A5P29400 CPM-211ENST00000551568 6655 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL4A5P29400 PSD4-205ENST00000441564 11234 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL4A5P29400 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
COL4A5P29400 UBN1-208ENST00000590769 3530 ntTSL 2 BASIC8.09□□□□□ -1.11
COL4A5P29400 ARHGAP42P4-201ENST00000549782 2934 ntBASIC8.09□□□□□ -1.11
COL4A5P29400 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
COL4A5P29400 HNRNPU-223ENST00000640001 4227 ntTSL 5 BASIC8.09□□□□□ -1.12
COL4A5P29400 HIVEP3-201ENST00000372583 12193 ntAPPRIS P3 TSL 1 (best) BASIC8.09□□□□□ -1.12
COL4A5P29400 UBAP2L-203ENST00000361546 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 VWDE-206ENST00000614403 4701 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 BTBD3-214ENST00000618296 4582 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 RGS5-215ENST00000439699 1441 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL4A5P29400 DEFA6-201ENST00000297436 469 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 RN7SKP69-201ENST00000365390 305 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL4A5P29400 Z68694.1-201ENST00000413929 841 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 MTND2P12-201ENST00000417560 1252 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 RPL21P50-201ENST00000417698 477 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 OR52I1-201ENST00000450052 1050 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 RN7SL214P-201ENST00000487317 265 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 SCARNA21.2-201ENST00000516600 166 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 ODF1-202ENST00000518835 368 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 AC006441.3-201ENST00000580121 456 ntTSL 4 BASIC8.08□□□□□ -1.12
COL4A5P29400 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL4A5P29400 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 FAM122C-201ENST00000370784 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC8.08□□□□□ -1.12
COL4A5P29400 RPL31P11-201ENST00000426558 1558 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC091305.2-201ENST00000624049 1576 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 CTNND1-208ENST00000428599 6016 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 CTNND1-232ENST00000532649 6026 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 CTNND1-237ENST00000534579 6024 ntTSL 5 BASIC8.08□□□□□ -1.12
COL4A5P29400 PCBD2-204ENST00000512783 5621 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 DCP2-208ENST00000515408 8029 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 ZNF350-201ENST00000243644 2338 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC8.08□□□□□ -1.12
COL4A5P29400 MCM8-202ENST00000378883 3574 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 SNORA38B-201ENST00000363524 131 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 AL031985.1-201ENST00000392713 418 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 RN7SKP206-201ENST00000410823 293 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 HMGN1P20-201ENST00000411849 300 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
COL4A5P29400 RPL12P12-201ENST00000424633 501 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 VTCN1-204ENST00000430871 569 ntTSL 5 BASIC8.08□□□□□ -1.12
COL4A5P29400 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 CXCR2P1-202ENST00000443392 1074 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 CEACAMP5-201ENST00000448037 961 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC133965.1-201ENST00000452984 354 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC068228.1-201ENST00000461723 211 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC8.08□□□□□ -1.12
COL4A5P29400 RNA5SP287-201ENST00000516358 103 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 AC122688.2-201ENST00000543922 585 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 AC008521.2-201ENST00000591021 259 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AP001437.1-201ENST00000608783 456 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC8.08□□□□□ -1.12
COL4A5P29400 MIR7854-201ENST00000620068 65 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 MIR4302-201ENST00000638058 60 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 AC007938.1-201ENST00000562524 2902 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 KARSP1-201ENST00000451871 1752 ntBASIC8.08□□□□□ -1.12
COL4A5P29400 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 LINC02362-203ENST00000617323 2044 ntTSL 2 BASIC8.08□□□□□ -1.12
COL4A5P29400 EPHB2-204ENST00000400191 10816 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
COL4A5P29400 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 CASC19-246ENST00000641625 1606 ntBASIC8.07□□□□□ -1.12
COL4A5P29400 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL4A5P29400 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL4A5P29400 FBXW10-203ENST00000395665 3431 ntAPPRIS P3 TSL 1 (best) BASIC8.07□□□□□ -1.12
COL4A5P29400 BUB1-202ENST00000409311 3287 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL4A5P29400 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 PPP3R2-201ENST00000374806 3387 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
COL4A5P29400 LINC01877-203ENST00000439734 2287 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
COL4A5P29400 PHACTR1-205ENST00000379350 4784 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC8.07□□□□□ -1.12
COL4A5P29400 AGAP1-207ENST00000428334 10090 ntTSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 MUC3A-201ENST00000379458 11226 ntAPPRIS P2 TSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 RPL5P20-201ENST00000403848 896 ntBASIC8.07□□□□□ -1.12
COL4A5P29400 RN7SKP232-201ENST00000410170 290 ntBASIC8.07□□□□□ -1.12
COL4A5P29400 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC8.07□□□□□ -1.12
COL4A5P29400 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC8.07□□□□□ -1.12
COL4A5P29400 PGM5P3-AS1-202ENST00000442069 615 ntTSL 2 BASIC8.07□□□□□ -1.12
COL4A5P29400 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC8.07□□□□□ -1.12
COL4A5P29400 AC005699.1-204ENST00000509244 747 ntTSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 AC006499.4-201ENST00000510947 694 ntBASIC8.07□□□□□ -1.12
COL4A5P29400 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC8.07□□□□□ -1.12
COL4A5P29400 AC093283.1-201ENST00000565306 1075 ntBASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms