Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PDE4DIP-208ENST00000464103 1055 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 AC084251.1-201ENST00000521867 382 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC090539.2-201ENST00000523425 671 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC087257.2-201ENST00000538759 928 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 PRB1-203ENST00000545626 710 ntAPPRIS ALT2 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 COX6CP11-201ENST00000555293 229 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 MIR4262-201ENST00000578394 54 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 MIR3187-201ENST00000583431 70 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 AC015802.4-202ENST00000591967 474 ntTSL 3 BASIC8.68□□□□□ -1.02
HMGB1P09429 RPS11-203ENST00000596873 583 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 ZNF528-AS1-204ENST00000601562 1069 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 AC108451.2-201ENST00000603875 538 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC007262.1-201ENST00000604099 321 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AL109936.2-201ENST00000605350 650 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 uc_338.21-201ENST00000622458 147 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 AC091059.2-201ENST00000623355 614 ntBASIC8.68□□□□□ -1.02
HMGB1P09429 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC8.68□□□□□ -1.02
HMGB1P09429 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC8.68□□□□□ -1.02
HMGB1P09429 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 CTNND1-212ENST00000525902 4984 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 CTNND1-214ENST00000526772 4966 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC8.68□□□□□ -1.02
HMGB1P09429 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC8.68□□□□□ -1.02
HMGB1P09429 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 RNA5SP218-201ENST00000363188 109 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 RNU6-618P-201ENST00000363518 112 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
HMGB1P09429 TRAV12-3-201ENST00000390442 399 ntAPPRIS P1 BASIC8.67□□□□□ -1.02
HMGB1P09429 TMEM213-201ENST00000397602 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 AL391419.1-201ENST00000398901 1275 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AL355862.1-201ENST00000412705 353 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC8.67□□□□□ -1.02
HMGB1P09429 IL5RA-204ENST00000418488 5521 ntTSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 RPS19P6-201ENST00000441327 433 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC8.67□□□□□ -1.02
HMGB1P09429 HIST1H2APS6-201ENST00000448609 364 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AL591379.2-201ENST00000450223 397 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC8.67□□□□□ -1.02
HMGB1P09429 AC113404.1-201ENST00000502589 756 ntTSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 MRPL57P6-201ENST00000506570 309 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC027801.3-201ENST00000515049 698 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC8.67□□□□□ -1.02
HMGB1P09429 LACTB2-AS1-204ENST00000519167 793 ntTSL 3 BASIC8.67□□□□□ -1.02
HMGB1P09429 AC084880.4-201ENST00000538405 577 ntTSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 LINC02384-207ENST00000542875 551 ntTSL 4 BASIC8.67□□□□□ -1.02
HMGB1P09429 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 MT1B-202ENST00000562399 351 ntTSL 3 BASIC8.67□□□□□ -1.02
HMGB1P09429 AC011374.1-201ENST00000564471 1567 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 AC027281.1-201ENST00000574178 758 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC8.67□□□□□ -1.02
HMGB1P09429 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 BOLA2P1-201ENST00000584794 232 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 NDUFA3P1-201ENST00000588007 252 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AP001120.4-201ENST00000590231 108 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC080112.3-201ENST00000612552 880 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC015922.4-201ENST00000612568 690 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 FAM27E3-202ENST00000614611 340 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 AC010320.5-201ENST00000619124 676 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 OR4C1P-202ENST00000641065 1569 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC8.67□□□□□ -1.02
HMGB1P09429 KLHL7-203ENST00000409689 3231 ntTSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 NEDD9-208ENST00000504387 3211 ntAPPRIS ALT2 TSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 LIN7A-204ENST00000552864 6112 ntAPPRIS P1 TSL 1 (best) BASIC8.67□□□□□ -1.02
HMGB1P09429 AC009166.2-201ENST00000624410 2833 ntBASIC8.67□□□□□ -1.02
HMGB1P09429 SLC39A12-203ENST00000377374 2639 ntAPPRIS P3 TSL 2 BASIC8.67□□□□□ -1.02
HMGB1P09429 MPPED2-201ENST00000358117 2405 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 TRIM49-201ENST00000329758 2163 ntAPPRIS P2 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 TRIM49C-201ENST00000448984 2163 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 FOLH1B-202ENST00000529567 2145 ntBASIC8.66□□□□□ -1.02
HMGB1P09429 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC8.66□□□□□ -1.02
HMGB1P09429 ZNF189-202ENST00000339664 3021 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
HMGB1P09429 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC8.66□□□□□ -1.02
HMGB1P09429 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC8.66□□□□□ -1.02
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms