Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL049651.1-201ENST00000440798 719 ntTSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AL359644.1-204ENST00000440807 440 ntTSL 3 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 FUNDC2P2-202ENST00000443452 493 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 RPS23-208ENST00000512493 443 ntTSL 3 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC091182.2-201ENST00000520431 578 ntTSL 4 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AP003119.2-201ENST00000528075 336 ntTSL 3 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 CRADD-210ENST00000552033 622 ntTSL 3 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 MIR4685-201ENST00000578185 69 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 RN7SL835P-201ENST00000579920 262 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 AL034374.2-201ENST00000605281 548 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC104184.1-201ENST00000607513 721 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 FAM228B-205ENST00000611127 975 ntAPPRIS P3 TSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC034229.6-201ENST00000623704 224 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 AL009031.1-201ENST00000632346 1026 ntTSL 2 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 TUBBP10-201ENST00000427668 1301 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 RAB2B-201ENST00000397762 2928 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 MRPS31-201ENST00000323563 1462 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 SMYD3-218ENST00000630181 1458 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 GABRA6-207ENST00000523217 2393 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 NUP210L-202ENST00000368553 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 SNORA30B-201ENST00000365319 129 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 FABP9-201ENST00000379071 497 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 MIR199B-201ENST00000384849 110 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 MIR640-201ENST00000385086 96 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 RPL9P21-201ENST00000392269 505 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL596451.1-201ENST00000419824 572 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL627308.2-201ENST00000420014 432 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 RPL6P2-201ENST00000425480 783 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC01049-201ENST00000426840 742 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC009299.1-201ENST00000429684 717 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 ST13P2-201ENST00000438916 1109 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 RPSAP49-201ENST00000445182 886 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 HIST1H2APS6-201ENST00000448609 364 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 LYPD6B-207ENST00000450639 484 ntAPPRIS ALT2 TSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL357143.1-201ENST00000457239 934 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC009411.2-201ENST00000458359 539 ntTSL 4 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 RPL34P22-201ENST00000468193 318 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 RN7SL259P-201ENST00000478499 253 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 RPS4XP23-201ENST00000487801 237 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 LSAMP-AS1-201ENST00000490351 553 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 OR7E83P-201ENST00000511021 970 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC01151-201ENST00000521608 571 ntTSL 4 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 OR7E2P-201ENST00000533071 889 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 RAP1B-230ENST00000543697 734 ntTSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC126177.6-201ENST00000550420 1009 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ULK4P1-202ENST00000565174 503 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 OR5AH1P-201ENST00000595968 283 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 PRR13P3-201ENST00000603578 376 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC007262.1-201ENST00000604099 321 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 Metazoa_SRP.96-201ENST00000621315 318 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
NKX3-1Q99801 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC6.16□□□□□ -1.42
NKX3-1Q99801 AL031651.1-201ENST00000615357 1438 ntBASIC6.16□□□□□ -1.42
NKX3-1Q99801 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.15□□□□□ -1.42
NKX3-1Q99801 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
NKX3-1Q99801 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms