Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 HHAT-203ENST00000367010 3626 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 AL445933.1-201ENST00000434240 2242 ntBASIC7.96□□□□□ -1.14
MSX1P28360 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 TMEM230-204ENST00000379277 1536 ntAPPRIS P1 TSL 3 BASIC7.96□□□□□ -1.14
MSX1P28360 PPP2R3A-205ENST00000490467 1782 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 AC126474.2-201ENST00000623268 1750 ntBASIC7.96□□□□□ -1.14
MSX1P28360 CAV1-201ENST00000341049 2704 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 AL049776.1-201ENST00000624600 2025 ntBASIC7.96□□□□□ -1.14
MSX1P28360 CYP3A43-202ENST00000312017 1349 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 LINC01128-205ENST00000445118 6606 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 NXF5-205ENST00000473265 1348 ntAPPRIS P2 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 EFTUD2-201ENST00000402521 3045 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC7.96□□□□□ -1.14
MSX1P28360 MRPS23-201ENST00000313608 5621 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 SLC28A2-201ENST00000347644 4374 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 SYNE1-217ENST00000466159 2610 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
MSX1P28360 AKT3-202ENST00000336199 1688 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 MIR4458HG-203ENST00000606459 3239 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 TBC1D31-202ENST00000327098 2985 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 RORB-202ENST00000396204 2996 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 TCF7L2-216ENST00000534894 3778 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 MTF2-201ENST00000370298 4125 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 CKAP2-201ENST00000258607 3375 ntAPPRIS P3 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 CORIN-202ENST00000502252 3112 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 AL355852.1-201ENST00000454081 1771 ntBASIC7.95□□□□□ -1.14
MSX1P28360 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 AL354732.1-201ENST00000416416 2080 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 CD36-209ENST00000435819 2365 ntAPPRIS P1 TSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 GCSAML-204ENST00000463359 1822 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 POLD3-201ENST00000263681 3821 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 JAKMIP2-202ENST00000333010 2992 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 AKAP14-201ENST00000334356 608 ntAPPRIS ALT2 TSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 ZNF254-201ENST00000339642 511 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 Y_RNA.192-201ENST00000363977 102 ntBASIC7.95□□□□□ -1.14
MSX1P28360 OR2AK2-201ENST00000366480 1154 ntAPPRIS ALT2 BASIC7.95□□□□□ -1.14
MSX1P28360 CENPW-201ENST00000368325 528 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AURKA-203ENST00000371356 2112 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 ZNF207-204ENST00000394673 2124 ntAPPRIS P3 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 VN1R12P-201ENST00000403778 876 ntBASIC7.95□□□□□ -1.14
MSX1P28360 RN7SKP169-201ENST00000411124 291 ntBASIC7.95□□□□□ -1.14
MSX1P28360 TCEA1P4-201ENST00000415066 844 ntBASIC7.95□□□□□ -1.14
MSX1P28360 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 LINC01865-201ENST00000430529 845 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AC018738.1-201ENST00000441378 210 ntBASIC7.95□□□□□ -1.14
MSX1P28360 AC107983.1-201ENST00000442562 210 ntBASIC7.95□□□□□ -1.14
MSX1P28360 MTND6P21-201ENST00000443620 482 ntBASIC7.95□□□□□ -1.14
MSX1P28360 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 ENPP7P2-201ENST00000462675 943 ntBASIC7.95□□□□□ -1.14
MSX1P28360 RPL23AP66-201ENST00000494341 479 ntBASIC7.95□□□□□ -1.14
MSX1P28360 LINC02160-201ENST00000503577 517 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AC104090.1-201ENST00000506341 1171 ntBASIC7.95□□□□□ -1.14
MSX1P28360 ARL4AP2-201ENST00000507378 601 ntBASIC7.95□□□□□ -1.14
MSX1P28360 AC108516.2-201ENST00000508163 349 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 GNPDA1-212ENST00000513454 980 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 CLEC7A-208ENST00000525605 573 ntTSL 4 BASIC7.95□□□□□ -1.14
MSX1P28360 RBM4B-207ENST00000531969 769 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 OR5AL2P-201ENST00000532185 920 ntBASIC7.95□□□□□ -1.14
MSX1P28360 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AP002892.2-201ENST00000544195 560 ntTSL 4 BASIC7.95□□□□□ -1.14
MSX1P28360 DDIT3-205ENST00000552740 951 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 PSEN1-223ENST00000557511 1230 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AC138907.7-202ENST00000565347 540 ntTSL 4 BASIC7.95□□□□□ -1.14
MSX1P28360 AC141257.2-201ENST00000569199 540 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC7.95□□□□□ -1.14
MSX1P28360 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC7.95□□□□□ -1.14
MSX1P28360 C1orf186-208ENST00000603378 614 ntTSL 3 BASIC7.95□□□□□ -1.14
MSX1P28360 AL008582.1-201ENST00000609612 442 ntBASIC7.95□□□□□ -1.14
MSX1P28360 ADAL-208ENST00000610420 974 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 MIR6762-201ENST00000613340 86 ntBASIC7.95□□□□□ -1.14
MSX1P28360 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC7.95□□□□□ -1.14
MSX1P28360 AC006328.2-201ENST00000623198 397 ntBASIC7.95□□□□□ -1.14
MSX1P28360 AC012005.2-201ENST00000624333 397 ntBASIC7.95□□□□□ -1.14
MSX1P28360 PGAM1P5-203ENST00000626376 313 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 GSDMC-201ENST00000276708 2714 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 SPRYD4-201ENST00000338146 10779 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 HEMGN-201ENST00000259456 2192 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 PACRG-AS2-201ENST00000418665 1300 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 ALDH7A1-227ENST00000636879 2501 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 GEMIN6-201ENST00000281950 3728 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 LIPH-201ENST00000296252 4026 ntAPPRIS P1 TSL 1 (best) BASIC7.95□□□□□ -1.14
MSX1P28360 ZNF583-202ENST00000333201 4916 ntAPPRIS P1 TSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 SLC8A1-209ENST00000408028 2898 ntTSL 5 BASIC7.95□□□□□ -1.14
MSX1P28360 DBIL5P2-202ENST00000491724 1692 ntBASIC7.95□□□□□ -1.14
MSX1P28360 NUTM1-203ENST00000537011 4102 ntAPPRIS ALT2 TSL 2 BASIC7.95□□□□□ -1.14
MSX1P28360 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC7.95□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms