Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 RNU6-1055P-201ENST00000391085 107 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 C1D-203ENST00000409302 772 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 GAPDHP73-201ENST00000423411 1007 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC000362.1-201ENST00000433725 425 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL354983.1-201ENST00000434580 906 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 RPL5P27-201ENST00000437011 881 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL161646.1-201ENST00000447860 1013 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 ZNF695-204ENST00000487338 826 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC008967.1-201ENST00000504843 163 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AP002026.1-204ENST00000506454 749 ntTSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC112225.1-201ENST00000508230 297 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 EIF3KP1-201ENST00000513279 656 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 FCF1-203ENST00000553615 954 ntTSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC090826.1-201ENST00000564109 915 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 CMC2-213ENST00000565914 528 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC015853.3-201ENST00000570974 478 ntTSL 4 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL365223.1-201ENST00000574864 1297 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 LINC01892-201ENST00000579141 507 ntTSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 CUX2P1-201ENST00000606426 298 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL512413.1-201ENST00000606489 382 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC211486.5-201ENST00000616609 775 ntTSL 3 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL450226.2-201ENST00000622913 439 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 CU638689.4-205ENST00000623313 596 ntTSL 4 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC016582.3-206ENST00000636547 207 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 OR10G8-202ENST00000641224 1033 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 SP110-201ENST00000258381 2426 ntAPPRIS P4 TSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 FMO4-201ENST00000367749 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 KARSP2-201ENST00000415696 1639 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
NKX3-1Q99801 VEZF1P1-201ENST00000423931 1541 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 FBXW10-201ENST00000301938 3221 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
NKX3-1Q99801 MAPK10-323ENST00000641493 3207 ntBASIC6.2□□□□□ -1.42
NKX3-1Q99801 BRD7P6-201ENST00000431406 1860 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 MELK-211ENST00000545008 2236 ntTSL 2 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL357556.1-201ENST00000421884 1388 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC019270.1-201ENST00000523495 3488 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC242022.1-201ENST00000638002 1565 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC061975.5-201ENST00000584928 1441 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 TEAD1-201ENST00000334310 3075 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 SNORA51.7-201ENST00000384171 134 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC006511.2-201ENST00000388966 660 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 MIR301B-201ENST00000390813 78 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 RPL36A-202ENST00000392994 691 ntTSL 2 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 BCL2L15-202ENST00000393316 1084 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 OR7E91P-201ENST00000400027 866 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC023141.1-201ENST00000419418 379 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 MYO5BP3-201ENST00000431872 1279 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 ATP5LP4-201ENST00000434169 307 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 OR5G3-201ENST00000435756 929 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 CYP2C56P-201ENST00000440076 291 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 SNX18P9-201ENST00000440580 835 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 GAPDHP16-201ENST00000448152 962 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 SEC11A-202ENST00000455959 1223 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 LINC02024-202ENST00000493545 483 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 RPL5P11-201ENST00000498068 893 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC006070.1-201ENST00000508151 193 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 ENPP7P3-201ENST00000509123 241 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC092336.1-201ENST00000510562 415 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC114947.1-201ENST00000511991 432 ntTSL 2 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC087360.1-201ENST00000518788 616 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AP003032.1-201ENST00000526730 277 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AP003555.2-201ENST00000528507 655 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 SEC11A-209ENST00000560266 1089 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC133569.1-201ENST00000564327 373 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms