Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 POU5F1P4-201ENST00000413175 1085 ntBASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AC008764.7-201ENST00000593779 1081 ntBASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AC008175.2-201ENST00000612840 297 ntBASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AC120498.9-201ENST00000339021 3867 ntBASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.84■□□□□ 0.77
USH1CQ9Y6N9 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 AC005082.1-201ENST00000413042 2259 ntBASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 AL136116.3-201ENST00000402907 1138 ntBASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.83■□□□□ 0.77
USH1CQ9Y6N9 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.83■□□□□ 0.76
USH1CQ9Y6N9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 AL136162.1-201ENST00000607711 1078 ntBASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.82■□□□□ 0.76
USH1CQ9Y6N9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 AC099791.1-201ENST00000416440 715 ntBASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
USH1CQ9Y6N9 AC090340.1-201ENST00000620778 4980 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms