Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 AC125437.2-201ENST00000625180 2167 ntBASIC16.15■□□□□ 0.18
FOXA2Q9Y261 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
FOXA2Q9Y261 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXA2Q9Y261 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXA2Q9Y261 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
FOXA2Q9Y261 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AC087633.2-202ENST00000565166 1439 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 RARRES2P4-201ENST00000514074 484 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AC090192.1-201ENST00000517740 490 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AC016405.3-201ENST00000607710 860 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 OR10C1-204ENST00000622521 1039 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AL691432.2-201ENST00000607222 2038 ntBASIC16.14■□□□□ 0.17
FOXA2Q9Y261 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC16.14■□□□□ 0.17
FOXA2Q9Y261 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 CROCCP5-201ENST00000436658 830 ntBASIC16.13■□□□□ 0.17
FOXA2Q9Y261 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 AL356652.1-201ENST00000615962 565 ntBASIC16.13■□□□□ 0.17
FOXA2Q9Y261 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA2Q9Y261 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA2Q9Y261 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms