Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 AL596275.1-201ENST00000423464 877 ntBASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.8■□□□□ 0.44
CLCF1Q9UBD9 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 Z99916.2-201ENST00000604037 246 ntBASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 Six3os1_6.1-201ENST00000620790 196 ntBASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLCF1Q9UBD9 AC007375.3-201ENST00000600936 2314 ntBASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLCF1Q9UBD9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 AC012618.2-201ENST00000428058 849 ntBASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.77■□□□□ 0.44
CLCF1Q9UBD9 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC17.77■□□□□ 0.43
CLCF1Q9UBD9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CLCF1Q9UBD9 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLCF1Q9UBD9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
CLCF1Q9UBD9 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
CLCF1Q9UBD9 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 PNN-205ENST00000556530 601 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLCF1Q9UBD9 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms