Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL25A1Q9BXS0 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL25A1Q9BXS0 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AC023632.3-201ENST00000521633 145 ntBASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AC055717.3-201ENST00000622967 595 ntBASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 AC016734.2-201ENST00000624325 1377 ntBASIC20.45■□□□□ 0.86
COL25A1Q9BXS0 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 STARP1-201ENST00000397973 869 ntBASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 AL023803.3-201ENST00000615559 522 ntBASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
COL25A1Q9BXS0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 AL645929.1-201ENST00000420084 975 ntBASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 TSPY17P-201ENST00000450329 467 ntBASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 C1QL1P1-201ENST00000568105 661 ntBASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 AC096733.2-201ENST00000609937 1394 ntBASIC20.43■□□□□ 0.86
COL25A1Q9BXS0 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AC022211.4-201ENST00000625094 2161 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AC092053.2-201ENST00000640557 1818 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 HNRNPA1P28-201ENST00000424481 961 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 YBX1P10-201ENST00000444752 975 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 BX276092.5-203ENST00000456199 560 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AP002414.4-201ENST00000589764 1148 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AL121672.3-201ENST00000608644 468 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 AC131212.4-201ENST00000623606 975 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 BX119927.1-201ENST00000636596 1552 ntBASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL25A1Q9BXS0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
COL25A1Q9BXS0 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL25A1Q9BXS0 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms