Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 HACD1-201ENST00000326961 773 ntTSL 2 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 TESC-206ENST00000541210 936 ntTSL 3 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 CCDC92B-201ENST00000575506 885 ntBASIC17.38■□□□□ 0.37
NKX3-1Q99801 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 TERF1P2-201ENST00000583350 1212 ntBASIC17.38■□□□□ 0.37
NKX3-1Q99801 KRT18P61-201ENST00000585825 1298 ntBASIC17.38■□□□□ 0.37
NKX3-1Q99801 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.38■□□□□ 0.37
NKX3-1Q99801 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
NKX3-1Q99801 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 AC123595.1-201ENST00000440769 1046 ntBASIC17.37■□□□□ 0.37
NKX3-1Q99801 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 H19-201ENST00000411754 1788 ntTSL 5 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.37■□□□□ 0.37
NKX3-1Q99801 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
NKX3-1Q99801 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 AC007322.3-201ENST00000426526 701 ntBASIC17.36■□□□□ 0.37
NKX3-1Q99801 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC17.36■□□□□ 0.37
NKX3-1Q99801 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
NKX3-1Q99801 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
NKX3-1Q99801 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
NKX3-1Q99801 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms