Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.97■■□□□ 1.11
CCDC40Q4G0X9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 AC010980.2-201ENST00000587099 1412 ntBASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CCDC40Q4G0X9 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CCDC40Q4G0X9 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 AC080038.1-201ENST00000611274 1154 ntBASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.95■■□□□ 1.1
CCDC40Q4G0X9 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 AC093787.1-201ENST00000450396 207 ntBASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CCDC40Q4G0X9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 PTBP1P-201ENST00000554374 1601 ntBASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 AC073111.5-205ENST00000641717 521 ntBASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
CCDC40Q4G0X9 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CCDC40Q4G0X9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms