Protein–RNA interactions for Protein: Q12766

HMGXB3, HMG domain-containing protein 3, humanhuman

Predictions only

Length 1,538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3Q12766 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC35.49■■■■□ 3.27
HMGXB3Q12766 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC35.49■■■■□ 3.27
HMGXB3Q12766 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
HMGXB3Q12766 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
HMGXB3Q12766 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC35.49■■■■□ 3.27
HMGXB3Q12766 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC35.49■■■■□ 3.27
HMGXB3Q12766 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC35.49■■■■□ 3.27
HMGXB3Q12766 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC35.49■■■■□ 3.27
HMGXB3Q12766 KRT18P16-201ENST00000510337 1294 ntBASIC35.48■■■■□ 3.27
HMGXB3Q12766 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
HMGXB3Q12766 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
HMGXB3Q12766 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC35.48■■■■□ 3.27
HMGXB3Q12766 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
HMGXB3Q12766 C1orf229-201ENST00000623686 2258 ntBASIC35.48■■■■□ 3.27
HMGXB3Q12766 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC35.47■■■■□ 3.27
HMGXB3Q12766 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC35.47■■■■□ 3.27
HMGXB3Q12766 AC069148.1-201ENST00000608741 768 ntBASIC35.47■■■■□ 3.27
HMGXB3Q12766 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC35.47■■■■□ 3.27
HMGXB3Q12766 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC35.47■■■■□ 3.27
HMGXB3Q12766 KRT8P20-201ENST00000423953 1409 ntBASIC35.47■■■■□ 3.27
HMGXB3Q12766 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC35.47■■■■□ 3.27
HMGXB3Q12766 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC35.47■■■■□ 3.27
HMGXB3Q12766 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC35.47■■■■□ 3.27
HMGXB3Q12766 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
HMGXB3Q12766 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC35.46■■■■□ 3.27
HMGXB3Q12766 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
HMGXB3Q12766 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC35.46■■■■□ 3.27
HMGXB3Q12766 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
HMGXB3Q12766 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC35.46■■■■□ 3.27
HMGXB3Q12766 AC007663.1-201ENST00000438948 1240 ntBASIC35.46■■■■□ 3.27
HMGXB3Q12766 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC35.46■■■■□ 3.27
HMGXB3Q12766 AC141257.4-201ENST00000634557 245 ntBASIC35.46■■■■□ 3.27
HMGXB3Q12766 AC136944.6-201ENST00000634818 245 ntBASIC35.46■■■■□ 3.27
HMGXB3Q12766 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC35.46■■■■□ 3.27
HMGXB3Q12766 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
HMGXB3Q12766 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC35.45■■■■□ 3.27
HMGXB3Q12766 CD70-202ENST00000423145 881 ntTSL 2 BASIC35.45■■■■□ 3.27
HMGXB3Q12766 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC35.45■■■■□ 3.27
HMGXB3Q12766 MFAP1P1-201ENST00000442257 1255 ntBASIC35.45■■■■□ 3.27
HMGXB3Q12766 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC35.45■■■■□ 3.27
HMGXB3Q12766 AC093458.2-201ENST00000623150 629 ntBASIC35.45■■■■□ 3.27
HMGXB3Q12766 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC35.45■■■■□ 3.27
HMGXB3Q12766 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC35.45■■■■□ 3.27
HMGXB3Q12766 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
HMGXB3Q12766 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
HMGXB3Q12766 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC35.44■■■■□ 3.26
HMGXB3Q12766 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC35.44■■■■□ 3.26
HMGXB3Q12766 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 SLC25A1P2-201ENST00000430693 912 ntBASIC35.43■■■■□ 3.26
HMGXB3Q12766 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 CD81-212ENST00000526072 1172 ntTSL 5 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 AC116562.4-202ENST00000641738 218 ntBASIC35.43■■■■□ 3.26
HMGXB3Q12766 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC35.43■■■■□ 3.26
HMGXB3Q12766 PARN-205ENST00000539279 1557 ntTSL 2 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC35.43■■■■□ 3.26
HMGXB3Q12766 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
HMGXB3Q12766 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC35.43■■■■□ 3.26
HMGXB3Q12766 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 CCR12P-201ENST00000446203 998 ntBASIC35.42■■■■□ 3.26
HMGXB3Q12766 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 AC083849.1-201ENST00000615227 514 ntBASIC35.42■■■■□ 3.26
HMGXB3Q12766 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
HMGXB3Q12766 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC35.42■■■■□ 3.26
HMGXB3Q12766 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 AP006587.1-201ENST00000534129 1502 ntBASIC35.42■■■■□ 3.26
HMGXB3Q12766 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 AL671277.2-201ENST00000458060 996 ntBASIC35.42■■■■□ 3.26
HMGXB3Q12766 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 VPS72-207ENST00000640458 689 ntTSL 5 BASIC35.42■■■■□ 3.26
HMGXB3Q12766 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 AC092338.2-201ENST00000568827 1415 ntBASIC35.41■■■■□ 3.26
HMGXB3Q12766 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
HMGXB3Q12766 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
HMGXB3Q12766 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC35.41■■■■□ 3.26
HMGXB3Q12766 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC35.41■■■■□ 3.26
HMGXB3Q12766 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 AL359075.1-203ENST00000462729 1002 ntBASIC35.41■■■■□ 3.26
HMGXB3Q12766 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 CLN6-214ENST00000636314 442 ntTSL 3 BASIC35.41■■■■□ 3.26
HMGXB3Q12766 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
HMGXB3Q12766 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC35.4■■■■□ 3.26
HMGXB3Q12766 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC35.4■■■■□ 3.26
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms