Protein–RNA interactions for Protein: P53549

RPT4, 26S proteasome subunit RPT4, yeastyeast

Known RBP Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPT4P53549 YOR008C-AYOR008C-A 225 nt0.62□□□□□ -2.31
RPT4P53549 AI1Q0050 2505 nt0.6□□□□□ -2.31
RPT4P53549 OST4YDL232W 111 nt0.6□□□□□ -2.31
RPT4P53549 HAL9YOL089C 3093 nt0.59□□□□□ -2.31
RPT4P53549 Q0142Q0142 177 nt0.59□□□□□ -2.31
RPT4P53549 BLI1YKL061W 342 nt0.59□□□□□ -2.31
RPT4P53549 YOR161W-AYOR161W-A 81 nt0.59□□□□□ -2.31
RPT4P53549 BIR1YJR089W 2865 nt0.59□□□□□ -2.32
RPT4P53549 PRP42YDR235W 1635 nt0.59□□□□□ -2.32
RPT4P53549 snR74snR74 88 nt0.58□□□□□ -2.32
RPT4P53549 YGL123C-AYGL123C-A 231 nt0.58□□□□□ -2.32
RPT4P53549 YMR172C-AYMR172C-A 384 nt0.58□□□□□ -2.32
RPT4P53549 snR65snR65 100 nt0.57□□□□□ -2.32
RPT4P53549 ULI1YFR026C 510 nt0.57□□□□□ -2.32
RPT4P53549 tN(GUU)QtN(GUU)Q 71 nt0.56□□□□□ -2.32
RPT4P53549 YPR010C-AYPR010C-A 219 nt0.56□□□□□ -2.32
RPT4P53549 YOR345CYOR345C 351 nt0.55□□□□□ -2.32
RPT4P53549 BEM3YPL115C 3387 nt0.55□□□□□ -2.32
RPT4P53549 PET111YMR257C 2403 nt0.55□□□□□ -2.32
RPT4P53549 YKL100W-AYKL100W-A 90 nt0.54□□□□□ -2.32
RPT4P53549 YCR022CYCR022C 345 nt0.53□□□□□ -2.32
RPT4P53549 YNL146WYNL146W 303 nt0.53□□□□□ -2.32
RPT4P53549 UTP8YGR128C 2142 nt0.53□□□□□ -2.32
RPT4P53549 YOR192C-BYOR192C-B 5313 nt0.52□□□□□ -2.33
RPT4P53549 SBH1YER087C-B 249 nt0.51□□□□□ -2.33
RPT4P53549 IQG1YPL242C 4488 nt0.5□□□□□ -2.33
RPT4P53549 YSP1YHR155W 3687 nt0.49□□□□□ -2.33
RPT4P53549 COX12YLR038C 252 nt0.47□□□□□ -2.33
RPT4P53549 NNF2YGR089W 2811 nt0.46□□□□□ -2.34
RPT4P53549 YLR041WYLR041W 321 nt0.46□□□□□ -2.34
RPT4P53549 BUL2YML111W 2763 nt0.45□□□□□ -2.34
RPT4P53549 YER053C-AYER053C-A 114 nt0.45□□□□□ -2.34
RPT4P53549 YHR131W-AYHR131W-A 246 nt0.45□□□□□ -2.34
RPT4P53549 MLP1YKR095W 5628 nt0.45□□□□□ -2.34
RPT4P53549 YOR231C-AYOR231C-A 201 nt0.44□□□□□ -2.34
RPT4P53549 YPL152W-AYPL152W-A 99 nt0.44□□□□□ -2.34
RPT4P53549 YBR182C-AYBR182C-A 195 nt0.44□□□□□ -2.34
RPT4P53549 snR49snR49 165 nt0.44□□□□□ -2.34
RPT4P53549 YCR038W-AYCR038W-A 126 nt0.43□□□□□ -2.34
RPT4P53549 YDR366CYDR366C 399 nt0.43□□□□□ -2.34
RPT4P53549 SNU13YEL026W 381 nt0.43□□□□□ -2.34
RPT4P53549 YER078W-AYER078W-A 165 nt0.43□□□□□ -2.34
RPT4P53549 YIR030W-AYIR030W-A 384 nt0.43□□□□□ -2.34
RPT4P53549 YIL002W-AYIL002W-A 210 nt0.42□□□□□ -2.34
RPT4P53549 YKU70YMR284W 1809 nt0.42□□□□□ -2.34
RPT4P53549 snR55snR55 98 nt0.4□□□□□ -2.35
RPT4P53549 tF(GAA)QtF(GAA)Q 75 nt0.4□□□□□ -2.35
RPT4P53549 YDR371C-AYDR371C-A 105 nt0.39□□□□□ -2.35
RPT4P53549 RPS26AYGL189C 360 nt0.39□□□□□ -2.35
RPT4P53549 ORC3YLL004W 1851 nt0.37□□□□□ -2.35
RPT4P53549 YLL006W-AYLL006W-A 177 nt0.37□□□□□ -2.35
RPT4P53549 NIP1YMR309C 2439 nt0.37□□□□□ -2.35
RPT4P53549 ABF2YMR072W 552 nt0.36□□□□□ -2.35
RPT4P53549 YER181CYER181C 324 nt0.35□□□□□ -2.35
RPT4P53549 YOL155W-AYOL155W-A 135 nt0.34□□□□□ -2.36
RPT4P53549 APQ12YIL040W 417 nt0.33□□□□□ -2.36
RPT4P53549 YBR072C-AYBR072C-A 162 nt0.33□□□□□ -2.36
RPT4P53549 MYO1YHR023W 5787 nt0.32□□□□□ -2.36
RPT4P53549 YLR232WYLR232W 348 nt0.32□□□□□ -2.36
RPT4P53549 YGL041CYGL041C 204 nt0.31□□□□□ -2.36
RPT4P53549 YML099W-AYML099W-A 330 nt0.31□□□□□ -2.36
RPT4P53549 MLP2YIL149C 5040 nt0.31□□□□□ -2.36
RPT4P53549 YGL188C-AYGL188C-A 141 nt0.28□□□□□ -2.36
RPT4P53549 YBR131C-AYBR131C-A 90 nt0.28□□□□□ -2.36
RPT4P53549 RCO1YMR075W 2055 nt0.28□□□□□ -2.37
RPT4P53549 YBL100W-BYBL100W-B 5313 nt0.27□□□□□ -2.37
RPT4P53549 THO2YNL139C 4794 nt0.26□□□□□ -2.37
RPT4P53549 YNL054W-BYNL054W-B 5250 nt0.26□□□□□ -2.37
RPT4P53549 TAH1YCR060W 336 nt0.26□□□□□ -2.37
RPT4P53549 YOL013W-AYOL013W-A 192 nt0.25□□□□□ -2.37
RPT4P53549 ESP1YGR098C 4893 nt0.23□□□□□ -2.37
RPT4P53549 YDR544CYDR544C 429 nt0.23□□□□□ -2.37
RPT4P53549 YOR186C-AYOR186C-A 210 nt0.23□□□□□ -2.37
RPT4P53549 PRP39YML046W 1890 nt0.22□□□□□ -2.37
RPT4P53549 GLG1YKR058W 1851 nt0.22□□□□□ -2.37
RPT4P53549 SDH6YDR379C-A 240 nt0.21□□□□□ -2.38
RPT4P53549 YMR158W-BYMR158W-B 321 nt0.21□□□□□ -2.38
RPT4P53549 YEL073CYEL073C 324 nt0.2□□□□□ -2.38
RPT4P53549 YOR302WYOR302W 78 nt0.2□□□□□ -2.38
RPT4P53549 CSE1YGL238W 2883 nt0.19□□□□□ -2.38
RPT4P53549 YEL014CYEL014C 306 nt0.18□□□□□ -2.38
RPT4P53549 YBL039C-AYBL039C-A 84 nt0.18□□□□□ -2.38
RPT4P53549 YNL097C-BYNL097C-B 123 nt0.18□□□□□ -2.38
RPT4P53549 snR80snR80 171 nt0.17□□□□□ -2.38
RPT4P53549 YJL182CYJL182C 318 nt0.16□□□□□ -2.38
RPT4P53549 COG6YNL041C 2520 nt0.16□□□□□ -2.38
RPT4P53549 YGL182CYGL182C 324 nt0.15□□□□□ -2.39
RPT4P53549 snR45snR45 172 nt0.12□□□□□ -2.39
RPT4P53549 snR8snR8 190 nt0.09□□□□□ -2.4
RPT4P53549 YBR099CYBR099C 384 nt0.09□□□□□ -2.4
RPT4P53549 YOR314W-AYOR314W-A 111 nt0.07□□□□□ -2.4
RPT4P53549 YOR381W-AYOR381W-A 168 nt0.05□□□□□ -2.4
RPT4P53549 SOV1YMR066W 2697 nt0.05□□□□□ -2.4
RPT4P53549 YOR170WYOR170W 306 nt0.02□□□□□ -2.41
RPT4P53549 snR46snR46 197 nt0□□□□□ -2.41
RPT4P53549 EST1YLR233C 2100 nt-0.01□□□□□ -2.41
RPT4P53549 RPM2YML091C 3609 nt-0.01□□□□□ -2.41
RPT4P53549 tM(CAU)Q2tM(CAU)Q2 78 nt-0.02□□□□□ -2.41
RPT4P53549 snR52snR52 92 nt-0.02□□□□□ -2.41
RPT4P53549 YDR210WYDR210W 228 nt-0.03□□□□□ -2.41
Retrieved 100 of 7,029 protein–RNA pairs in 14.1 ms