Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 YFR012W-AYFR012W-A 87 nt1.21□□□□□ -2.22
MSH1P25846 PRP16YKR086W 3216 nt1.21□□□□□ -2.22
MSH1P25846 BUD3YCL014W 4911 nt1.21□□□□□ -2.22
MSH1P25846 YNL170WYNL170W 396 nt1.2□□□□□ -2.22
MSH1P25846 YOR161W-AYOR161W-A 81 nt1.2□□□□□ -2.22
MSH1P25846 YNL284C-BYNL284C-B 5268 nt1.19□□□□□ -2.22
MSH1P25846 RPL26BYGR034W 384 nt1.19□□□□□ -2.22
MSH1P25846 YIL002W-AYIL002W-A 210 nt1.19□□□□□ -2.22
MSH1P25846 PRP42YDR235W 1635 nt1.18□□□□□ -2.22
MSH1P25846 YGL123C-AYGL123C-A 231 nt1.17□□□□□ -2.22
MSH1P25846 YGR164WYGR164W 336 nt1.17□□□□□ -2.22
MSH1P25846 SIP4YJL089W 2490 nt1.17□□□□□ -2.22
MSH1P25846 SDH6YDR379C-A 240 nt1.16□□□□□ -2.22
MSH1P25846 YDL073WYDL073W 2955 nt1.16□□□□□ -2.22
MSH1P25846 UBP3YER151C 2739 nt1.16□□□□□ -2.22
MSH1P25846 SPT7YBR081C 3999 nt1.15□□□□□ -2.22
MSH1P25846 PRP5YBR237W 2550 nt1.14□□□□□ -2.23
MSH1P25846 YHL015W-AYHL015W-A 84 nt1.13□□□□□ -2.23
MSH1P25846 YLR282CYLR282C 342 nt1.12□□□□□ -2.23
MSH1P25846 BFR2YDR299W 1605 nt1.11□□□□□ -2.23
MSH1P25846 YOR102WYOR102W 351 nt1.11□□□□□ -2.23
MSH1P25846 COX5BYIL111W 456 nt1.1□□□□□ -2.23
MSH1P25846 SEC8YPR055W 3198 nt1.09□□□□□ -2.23
MSH1P25846 tL(UAA)QtL(UAA)Q 85 nt1.09□□□□□ -2.23
MSH1P25846 STF2YGR008C 255 nt1.09□□□□□ -2.23
MSH1P25846 YGL182CYGL182C 324 nt1.08□□□□□ -2.24
MSH1P25846 snR190snR190 190 nt1.07□□□□□ -2.24
MSH1P25846 UTP8YGR128C 2142 nt1.07□□□□□ -2.24
MSH1P25846 YML002WYML002W 2214 nt1.06□□□□□ -2.24
MSH1P25846 EMT1tM(CAU)D 73 nt1.06□□□□□ -2.24
MSH1P25846 EMT5tM(CAU)J1 73 nt1.06□□□□□ -2.24
MSH1P25846 EMT3tM(CAU)J2 73 nt1.06□□□□□ -2.24
MSH1P25846 EMT4tM(CAU)M 73 nt1.06□□□□□ -2.24
MSH1P25846 EMT2tM(CAU)O2 73 nt1.06□□□□□ -2.24
MSH1P25846 YBL039C-AYBL039C-A 84 nt1.06□□□□□ -2.24
MSH1P25846 YPR160W-AYPR160W-A 81 nt1.06□□□□□ -2.24
MSH1P25846 YKL100W-AYKL100W-A 90 nt1.05□□□□□ -2.24
MSH1P25846 YLR399W-AYLR399W-A 105 nt1.05□□□□□ -2.24
MSH1P25846 HUG1YML058W-A 207 nt1.05□□□□□ -2.24
MSH1P25846 snR48snR48 113 nt1.05□□□□□ -2.24
MSH1P25846 YJR029WYJR029W 5268 nt1.05□□□□□ -2.24
MSH1P25846 YPR137C-BYPR137C-B 5268 nt1.05□□□□□ -2.24
MSH1P25846 FYV10YIL097W 1551 nt1.04□□□□□ -2.24
MSH1P25846 TAH1YCR060W 336 nt1.04□□□□□ -2.24
MSH1P25846 SNU13YEL026W 381 nt1.04□□□□□ -2.24
MSH1P25846 YLR041WYLR041W 321 nt1.04□□□□□ -2.24
MSH1P25846 YOR314W-AYOR314W-A 111 nt1.02□□□□□ -2.25
MSH1P25846 YOR329W-AYOR329W-A 210 nt1.01□□□□□ -2.25
MSH1P25846 CHS6YJL099W 2241 nt1□□□□□ -2.25
MSH1P25846 YDR544CYDR544C 429 nt0.99□□□□□ -2.25
MSH1P25846 MYO1YHR023W 5787 nt0.99□□□□□ -2.25
MSH1P25846 tN(GUU)QtN(GUU)Q 71 nt0.98□□□□□ -2.25
MSH1P25846 snR39BsnR39B 96 nt0.98□□□□□ -2.25
MSH1P25846 YCL001W-BYCL001W-B 255 nt0.98□□□□□ -2.25
MSH1P25846 Q0143Q0143 153 nt0.96□□□□□ -2.26
MSH1P25846 LTE1YAL024C 4308 nt0.96□□□□□ -2.26
MSH1P25846 PAU24YBR301W 363 nt0.95□□□□□ -2.26
MSH1P25846 RKR1YMR247C 4689 nt0.94□□□□□ -2.26
MSH1P25846 QCR9YGR183C 201 nt0.94□□□□□ -2.26
MSH1P25846 YIL071W-AYIL071W-A 477 nt0.94□□□□□ -2.26
MSH1P25846 YLR232WYLR232W 348 nt0.94□□□□□ -2.26
MSH1P25846 YSP1YHR155W 3687 nt0.92□□□□□ -2.26
MSH1P25846 BEM3YPL115C 3387 nt0.92□□□□□ -2.26
MSH1P25846 YHR131W-AYHR131W-A 246 nt0.92□□□□□ -2.26
MSH1P25846 OST4YDL232W 111 nt0.91□□□□□ -2.26
MSH1P25846 UTP20YBL004W 7482 nt0.91□□□□□ -2.26
MSH1P25846 YNL067W-BYNL067W-B 141 nt0.9□□□□□ -2.27
MSH1P25846 RPM2YML091C 3609 nt0.88□□□□□ -2.27
MSH1P25846 YNL205CYNL205C 423 nt0.88□□□□□ -2.27
MSH1P25846 tM(CAU)Q2tM(CAU)Q2 78 nt0.87□□□□□ -2.27
MSH1P25846 SEC1YDR164C 2175 nt0.87□□□□□ -2.27
MSH1P25846 COG6YNL041C 2520 nt0.86□□□□□ -2.27
MSH1P25846 YDR210WYDR210W 228 nt0.86□□□□□ -2.27
MSH1P25846 YCR095W-AYCR095W-A 159 nt0.84□□□□□ -2.27
MSH1P25846 snR85snR85 171 nt0.84□□□□□ -2.27
MSH1P25846 SOM1YEL059C-A 225 nt0.84□□□□□ -2.27
MSH1P25846 YJL127W-AYJL127W-A 117 nt0.82□□□□□ -2.28
MSH1P25846 YBR099CYBR099C 384 nt0.82□□□□□ -2.28
MSH1P25846 YIL142C-AYIL142C-A 333 nt0.8□□□□□ -2.28
MSH1P25846 YBR072C-AYBR072C-A 162 nt0.8□□□□□ -2.28
MSH1P25846 IQG1YPL242C 4488 nt0.77□□□□□ -2.29
MSH1P25846 PMP2YEL017C-A 132 nt0.76□□□□□ -2.29
MSH1P25846 YPR159C-AYPR159C-A 102 nt0.76□□□□□ -2.29
MSH1P25846 YOR192C-BYOR192C-B 5313 nt0.75□□□□□ -2.29
MSH1P25846 RCO1YMR075W 2055 nt0.74□□□□□ -2.29
MSH1P25846 NNF2YGR089W 2811 nt0.74□□□□□ -2.29
MSH1P25846 YGR146C-AYGR146C-A 162 nt0.74□□□□□ -2.29
MSH1P25846 YMR160WYMR160W 2451 nt0.74□□□□□ -2.29
MSH1P25846 GLG1YKR058W 1851 nt0.73□□□□□ -2.29
MSH1P25846 YNL103W-AYNL103W-A 90 nt0.72□□□□□ -2.29
MSH1P25846 tF(GAA)BtF(GAA)B 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)FtF(GAA)F 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)GtF(GAA)G 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)H1tF(GAA)H1 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)H2tF(GAA)H2 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)MtF(GAA)M 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)P1tF(GAA)P1 73 nt0.71□□□□□ -2.3
MSH1P25846 tF(GAA)P2tF(GAA)P2 73 nt0.71□□□□□ -2.3
MSH1P25846 YLL006W-AYLL006W-A 177 nt0.71□□□□□ -2.3
MSH1P25846 PET111YMR257C 2403 nt0.7□□□□□ -2.3
Retrieved 100 of 7,029 protein–RNA pairs in 13.7 ms