Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CLDN9O95484 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLDN9O95484 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLDN9O95484 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
CLDN9O95484 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.33■□□□□ 0.68
CLDN9O95484 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.33■□□□□ 0.68
CLDN9O95484 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 AC093787.1-201ENST00000450396 207 ntBASIC19.33■□□□□ 0.68
CLDN9O95484 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.33■□□□□ 0.68
CLDN9O95484 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.33■□□□□ 0.68
CLDN9O95484 AL031963.3-201ENST00000606441 850 ntBASIC19.33■□□□□ 0.68
CLDN9O95484 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.33■□□□□ 0.68
CLDN9O95484 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.33■□□□□ 0.68
CLDN9O95484 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.33■□□□□ 0.68
CLDN9O95484 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 MOK-225ENST00000522867 1883 ntTSL 5 BASIC19.33■□□□□ 0.68
CLDN9O95484 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLDN9O95484 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.32■□□□□ 0.68
CLDN9O95484 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.32■□□□□ 0.68
CLDN9O95484 AC133552.2-202ENST00000575694 574 ntBASIC19.32■□□□□ 0.68
CLDN9O95484 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLDN9O95484 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.32■□□□□ 0.68
CLDN9O95484 IKBKGP1-201ENST00000612193 1073 ntBASIC19.32■□□□□ 0.68
CLDN9O95484 AC073111.5-205ENST00000641717 521 ntBASIC19.32■□□□□ 0.68
CLDN9O95484 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CLDN9O95484 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 KRT16P6-202ENST00000425692 1426 ntBASIC19.32■□□□□ 0.68
CLDN9O95484 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 AC125437.2-201ENST00000625180 2167 ntBASIC19.32■□□□□ 0.68
CLDN9O95484 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLDN9O95484 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN9O95484 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CLDN9O95484 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
CLDN9O95484 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CLDN9O95484 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN9O95484 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN9O95484 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.31■□□□□ 0.68
CLDN9O95484 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 C2orf69P4-201ENST00000565394 541 ntBASIC19.31■□□□□ 0.68
CLDN9O95484 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.31■□□□□ 0.68
CLDN9O95484 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CLDN9O95484 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
CLDN9O95484 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.31■□□□□ 0.68
CLDN9O95484 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CLDN9O95484 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLDN9O95484 KRT17P1-201ENST00000399211 1546 ntBASIC19.3■□□□□ 0.68
CLDN9O95484 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN9O95484 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
CLDN9O95484 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.3■□□□□ 0.68
CLDN9O95484 AL137784.2-201ENST00000607332 1000 ntBASIC19.3■□□□□ 0.68
CLDN9O95484 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN9O95484 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CLDN9O95484 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.3■□□□□ 0.68
CLDN9O95484 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.3■□□□□ 0.68
CLDN9O95484 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLDN9O95484 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.29■□□□□ 0.68
CLDN9O95484 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.29■□□□□ 0.68
CLDN9O95484 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CLDN9O95484 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 64.2 ms